view tool_dependencies.xml @ 3:33b3938a8c2a draft

planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
author mvdbeek
date Sat, 15 Aug 2015 09:53:56 -0400
parents ec5356060e00
children 35f562227199
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<?xml version="1.0"?>
<tool_dependency>
<!--    <package name="ncbi_vdb" version="2.5.2">
        <repository name="package_ncbi_vdb_2_5_2" owner="mvdbeek" prior_installation_required="True" />
    </package>
-->
    <package name="ngs" version="1.1.3">
        <install version="1.0">
            <actions>
<action type="setup_perl_environment">
    <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
        <package name="perl" version="5.18.1" />
    </repository>
    <package>File::Copy</package>
    <package>File::Spec</package>
    <package>File::Copy::Recursive</package>
</action>
                <action target_filename="ngs-1.1.3.tar.gz" type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
                <action type="autoconf">--prefix=$INSTALL_DIR --build=$INSTALL_DIR</action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
    <readme>
  ncbi-ngs, required for sra-tools package.

    </readme>
  </package>
</tool_dependency>