Mercurial > repos > mvdbeek > package_ngs_1_1_3

changeset 1:d8ab6092efeb draft

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planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
author mvdbeek
date Sat, 15 Aug 2015 09:45:03 -0400
parents f090c319428b
children ec5356060e00
files tool_dependencies.xml
diffstat 1 files changed, 6 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Sat Aug 15 09:32:00 2015 -0400
+++ b/tool_dependencies.xml	Sat Aug 15 09:45:03 2015 -0400
@@ -1,15 +1,16 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="ncbi_vdb" version="2.5.2">
-        <repository changeset_revision="a3f02a928f5e" name="package_ncbi_vdb_2_5_2" owner="mvdbeek" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+<!--    <package name="ncbi_vdb" version="2.5.2">
+        <repository name="package_ncbi_vdb_2_5_2" owner="mvdbeek" prior_installation_required="True" />
     </package>
+-->
     <package name="ngs" version="1.1.3">
         <install version="1.0">
             <actions>
-                <action target_filename="ngs-1.1.3.tar.gz" type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
-                <action type="autoconf" />
+                <action type="download_by_url" target_filename="ngs-1.1.3.tar.gz">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
+                <action type="autoconf">--prefix=$INSTALL_DIR --build=$INSTALL_DIR</action>
                 <action type="set_environment">
-                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                 </action>
             </actions>
         </install>