Mercurial > repos > iuc > snpeff
annotate snpEff_databases.xml @ 5:92b80578fa22 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 344140b8df53b8b7024618bb04594607a045c03a
| author | iuc |
|---|---|
| date | Mon, 04 May 2015 22:37:25 -0400 |
| parents | 114f423f99c0 |
| children | aaa749ea91a2 |
| rev | line source |
|---|---|
| 2 | 1 <tool id="snpEff_databases" name="SnpEff Available Databases" version="@WRAPPER_VERSION@.0"> |
| 2 <description></description> | |
| 3 <macros> | |
| 4 <import>snpEff_macros.xml</import> | |
| 5 </macros> | |
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5
92b80578fa22
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 344140b8df53b8b7024618bb04594607a045c03a
iuc
parents:
2
diff
changeset
|
6 <expand macro="requirements" /> |
|
92b80578fa22
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 344140b8df53b8b7024618bb04594607a045c03a
iuc
parents:
2
diff
changeset
|
7 <expand macro="stdio" /> |
| 2 | 8 <command> |
| 9 <![CDATA[ | |
|
5
92b80578fa22
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 344140b8df53b8b7024618bb04594607a045c03a
iuc
parents:
2
diff
changeset
|
10 java -jar \$SNPEFF_JAR_PATH/snpEff.jar databases | grep -v '^---' | sed 's/^Genome/#Genome/' | sed 's/ *//g' > $snpeff_dbs |
| 2 | 11 ]]> |
| 12 </command> | |
| 13 <inputs> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data format="tabular" name="snpeff_dbs" label="${tool.name} @SNPEFF_VERSION@ available databases" /> | |
| 17 </outputs> | |
| 18 <help> | |
| 19 | |
| 20 @EXTERNAL_DOCUMENTATION@ | |
| 21 | |
| 22 @CITATION_SECTION@ | |
| 23 | |
| 24 </help> | |
| 25 </tool> | |
| 26 |