Mercurial > repos > iuc > snpeff

diff snpEff_databases.xml @ 5:92b80578fa22 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 344140b8df53b8b7024618bb04594607a045c03a
author: iuc
date: Mon, 04 May 2015 22:37:25 -0400
parents: 114f423f99c0
children: aaa749ea91a2
--- a/snpEff_databases.xml	Wed Apr 29 11:56:04 2015 -0400
+++ b/snpEff_databases.xml	Mon May 04 22:37:25 2015 -0400
@@ -1,12 +1,13 @@
 <tool id="snpEff_databases" name="SnpEff Available Databases" version="@WRAPPER_VERSION@.0">
     <description></description>
-    <expand macro="requirements" />
     <macros>
         <import>snpEff_macros.xml</import>
     </macros>
+    <expand macro="requirements" />
+    <expand macro="stdio" />
     <command>
 <![CDATA[
-    java -jar \$SNPEFF_JAR_PATH/snpEff.jar databases |  grep -v '^---' | sed 's/^Genome/#Genome/' | sed  's/  *//g' > $snpeff_dbs 
+    java -jar \$SNPEFF_JAR_PATH/snpEff.jar databases |  grep -v '^---' | sed 's/^Genome/#Genome/' | sed  's/  *//g' > $snpeff_dbs
 ]]>
     </command>
     <inputs>
@@ -14,7 +15,6 @@
     <outputs>
         <data format="tabular" name="snpeff_dbs" label="${tool.name} @SNPEFF_VERSION@ available databases" />
     </outputs>
-    <expand macro="stdio" />
     <help>
 
 @EXTERNAL_DOCUMENTATION@
author	iuc
date	Mon, 04 May 2015 22:37:25 -0400
parents	114f423f99c0
children	aaa749ea91a2