Mercurial > repos > iuc > snpeff
diff snpEff_databases.xml @ 2:114f423f99c0 draft
Uploaded
| author | iuc |
|---|---|
| date | Tue, 07 Apr 2015 10:54:12 -0400 |
| parents | |
| children | 92b80578fa22 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/snpEff_databases.xml Tue Apr 07 10:54:12 2015 -0400 @@ -0,0 +1,26 @@ +<tool id="snpEff_databases" name="SnpEff Available Databases" version="@WRAPPER_VERSION@.0"> + <description></description> + <expand macro="requirements" /> + <macros> + <import>snpEff_macros.xml</import> + </macros> + <command> +<![CDATA[ + java -jar \$SNPEFF_JAR_PATH/snpEff.jar databases | grep -v '^---' | sed 's/^Genome/#Genome/' | sed 's/ *//g' > $snpeff_dbs +]]> + </command> + <inputs> + </inputs> + <outputs> + <data format="tabular" name="snpeff_dbs" label="${tool.name} @SNPEFF_VERSION@ available databases" /> + </outputs> + <expand macro="stdio" /> + <help> + +@EXTERNAL_DOCUMENTATION@ + +@CITATION_SECTION@ + + </help> +</tool> +
