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1 <tool id="snpEff_databases" name="SnpEff Available Databases" version="@WRAPPER_VERSION@.0">
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2 <description></description>
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3 <expand macro="requirements" />
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4 <macros>
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5 <import>snpEff_macros.xml</import>
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6 </macros>
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7 <command>
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8 <![CDATA[
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9 java -jar \$SNPEFF_JAR_PATH/snpEff.jar databases | grep -v '^---' | sed 's/^Genome/#Genome/' | sed 's/ *//g' > $snpeff_dbs
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10 ]]>
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11 </command>
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12 <inputs>
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13 </inputs>
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14 <outputs>
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15 <data format="tabular" name="snpeff_dbs" label="${tool.name} @SNPEFF_VERSION@ available databases" />
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16 </outputs>
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17 <expand macro="stdio" />
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18 <help>
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19
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20 @EXTERNAL_DOCUMENTATION@
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21
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22 @CITATION_SECTION@
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23
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24 </help>
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25 </tool>
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26
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