Mercurial > repos > iuc > seqtk

annotate tool_test_output.md @ 9:f9305f8811b8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
author iuc
date Thu, 15 Oct 2015 13:05:45 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
9
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
1 # Tool Test Results (powered by Planemo)
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
2
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
3 ## Executive Summary
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
4
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
5 | Test State | Count |
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
6 | ---------- | ----- |
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
7 | Total | 2 |
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
8 | Passed | 1 |
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
9 | Error | 0 |
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
10 | Failure | 0 |
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
11 | Skipped | 0 |
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
12
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
13
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
14 ## Detailed Results
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
15
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
16 ### functional.test_toolbox.TestForTool_seqtk_comp.test_tool_000000
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
17
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
18 Job Passed
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
19
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
20
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
21 ### functional.test_toolbox.TestForTool_seqtk_comp.test_tool_000001
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
22
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
23 Job Error! (State: failure)
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
24
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
25 Command Line:
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
26
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
27 ```console
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
28 seqtk comp /tmp/tmpe3FMDm/files/000/dataset_3.dat | awk 'BEGIN{print "#chr\tlength\t#A\t#C\t#G\t#T\t#2\t#3\t#4\t#CpG\t#tv\t#ts\t#CpG-ts"}1' > /tmp/tmpe3FMDm/files/000/dataset_4.dat
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
29 ```
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
30
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
31 exited with code 0.
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
32
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
33 #### Problems
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
34
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
35
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
36 ```console
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
37 History item different than expected, difference (using diff):
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
38 ( /home/hxr/work/tools-iuc/tools/seqtk/test-data/seqtk_cutn.out v. /tmp/tmpe3FMDm/tmp/tmpguZsVkseqtk_cutn.out )
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
39 --- local_file
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
40 +++ history_data
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
41 @@ -1,4 +1,2 @@
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
42 ->test:1-17
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
43 -AACTGATCGATCGATCG
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
44 ->test:29-33
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
45 -ACATG
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
46 +#chr length #A #C #G #T #2 #3 #4 #CpG #tv #ts #CpG-ts
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
47 +test 33 7 5 5 5 0 0 11 6 0 0 0
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
48
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
49 ```
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
50
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
51
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
52
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
53
f9305f8811b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
parents:
diff changeset
54