Mercurial > repos > iuc > seqtk

view tool_test_output.md @ 9:f9305f8811b8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
author iuc
date Thu, 15 Oct 2015 13:05:45 -0400
parents
children
line wrap: on
line source

# Tool Test Results (powered by Planemo)

## Executive Summary

| Test State | Count |
| ---------- | ----- |
| Total      | 2 |
| Passed     | 1 |
| Error      | 0 |
| Failure    | 0 |
| Skipped    | 0 |


## Detailed Results

### functional.test_toolbox.TestForTool_seqtk_comp.test_tool_000000

Job Passed


### functional.test_toolbox.TestForTool_seqtk_comp.test_tool_000001

Job Error! (State: failure)

Command Line:

```console
seqtk comp  /tmp/tmpe3FMDm/files/000/dataset_3.dat | awk 'BEGIN{print "#chr\tlength\t#A\t#C\t#G\t#T\t#2\t#3\t#4\t#CpG\t#tv\t#ts\t#CpG-ts"}1'  > /tmp/tmpe3FMDm/files/000/dataset_4.dat
```

exited with code 0.

#### Problems


```console
History item  different than expected, difference (using diff):
( /home/hxr/work/tools-iuc/tools/seqtk/test-data/seqtk_cutn.out v. /tmp/tmpe3FMDm/tmp/tmpguZsVkseqtk_cutn.out )
--- local_file
+++ history_data
@@ -1,4 +1,2 @@
->test:1-17
-AACTGATCGATCGATCG
->test:29-33
-ACATG
+#chr	length	#A	#C	#G	#T	#2	#3	#4	#CpG	#tv	#ts	#CpG-ts
+test	33	7	5	5	5	0	0	11	6	0	0	0

```