Mercurial > repos > iuc > seqtk

comparison tool_test_output.md @ 9:f9305f8811b8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
author iuc
date Thu, 15 Oct 2015 13:05:45 -0400
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8:d3b46dec1f5e 9:f9305f8811b8
1 # Tool Test Results (powered by Planemo)
2
3 ## Executive Summary
4
5 | Test State | Count |
6 | ---------- | ----- |
7 | Total | 2 |
8 | Passed | 1 |
9 | Error | 0 |
10 | Failure | 0 |
11 | Skipped | 0 |
12
13
14 ## Detailed Results
15
16 ### functional.test_toolbox.TestForTool_seqtk_comp.test_tool_000000
17
18 Job Passed
19
20
21 ### functional.test_toolbox.TestForTool_seqtk_comp.test_tool_000001
22
23 Job Error! (State: failure)
24
25 Command Line:
26
27 ```console
28 seqtk comp /tmp/tmpe3FMDm/files/000/dataset_3.dat | awk 'BEGIN{print "#chr\tlength\t#A\t#C\t#G\t#T\t#2\t#3\t#4\t#CpG\t#tv\t#ts\t#CpG-ts"}1' > /tmp/tmpe3FMDm/files/000/dataset_4.dat
29 ```
30
31 exited with code 0.
32
33 #### Problems
34
35
36 ```console
37 History item different than expected, difference (using diff):
38 ( /home/hxr/work/tools-iuc/tools/seqtk/test-data/seqtk_cutn.out v. /tmp/tmpe3FMDm/tmp/tmpguZsVkseqtk_cutn.out )
39 --- local_file
40 +++ history_data
41 @@ -1,4 +1,2 @@
42 ->test:1-17
43 -AACTGATCGATCGATCG
44 ->test:29-33
45 -ACATG
46 +#chr length #A #C #G #T #2 #3 #4 #CpG #tv #ts #CpG-ts
47 +test 33 7 5 5 5 0 0 11 6 0 0 0
48
49 ```
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