Mercurial > repos > iuc > package_bowtie_2_2_5

annotate tool_dependencies.xml @ 2:e627be2bba58 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
author iuc
date Thu, 14 May 2015 22:46:29 -0400
parents f3b301780e36
children f5582ac5ba3c
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185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
iuc
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1 <?xml version="1.0"?>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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2 <tool_dependency>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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3 <package name="bowtie2" version="2.2.5">
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
iuc
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4 <install version="1.0">
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
iuc
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5 <actions_group>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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6 <actions os="linux" architecture="x86_64">
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f3b301780e36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 5c84ce50aff06cc7a1bad32557d9ca37bbc2afc0
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7 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/bowtie2/bowtie2-2.2.5-Linux-x86_64.tar.gz</action>
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185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
iuc
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8 <action type="move_directory_files">
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
iuc
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9 <source_directory>.</source_directory>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
iuc
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10 <destination_directory>$INSTALL_DIR</destination_directory>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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11 </action>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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12 </actions>
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e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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13 <actions>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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14 <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.5/bowtie2-2.2.5-source.zip</action>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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15 <action type="shell_command">make</action>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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16 <action type="move_file">
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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17 <source>bowtie2</source>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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18 <destination>$INSTALL_DIR/bin</destination>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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19 </action>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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20 <action type="move_file">
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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21 <source>bowtie2-build</source>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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22 <destination>$INSTALL_DIR/bin</destination>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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23 </action>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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24 <action type="move_file">
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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25 <source>bowtie2-inspect</source>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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26 <destination>$INSTALL_DIR/bin</destination>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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27 </action>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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28 <action type="move_file">
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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29 <source>bowtie</source>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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30 <destination>$INSTALL_DIR/bin</destination>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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31 </action>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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32 <action type="move_file">
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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33 <source>bowtie-build</source>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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34 <destination>$INSTALL_DIR/bin</destination>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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35 </action>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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36 <action type="move_file">
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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37 <source>bowtie-inspect</source>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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38 <destination>$INSTALL_DIR/bin</destination>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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39 </action>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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40 </actions>
0
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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41 <action type="set_environment">
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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42 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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43 </action>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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44 </actions_group>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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45 </install>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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46 <readme></readme>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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47 </package>
1
f3b301780e36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 5c84ce50aff06cc7a1bad32557d9ca37bbc2afc0
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48 </tool_dependency>