Mercurial > repos > iuc > package_bowtie_2_2_5
diff tool_dependencies.xml @ 2:e627be2bba58 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
| author | iuc |
|---|---|
| date | Thu, 14 May 2015 22:46:29 -0400 |
| parents | f3b301780e36 |
| children | f5582ac5ba3c |
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--- a/tool_dependencies.xml Wed May 13 09:21:39 2015 -0400 +++ b/tool_dependencies.xml Thu May 14 22:46:29 2015 -0400 @@ -10,6 +10,34 @@ <destination_directory>$INSTALL_DIR</destination_directory> </action> </actions> + <actions> + <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.5/bowtie2-2.2.5-source.zip</action> + <action type="shell_command">make</action> + <action type="move_file"> + <source>bowtie2</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="move_file"> + <source>bowtie2-build</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="move_file"> + <source>bowtie2-inspect</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="move_file"> + <source>bowtie</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="move_file"> + <source>bowtie-build</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="move_file"> + <source>bowtie-inspect</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + </actions> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action>