Mercurial > repos > iuc > package_bowtie_2_2_5

comparison tool_dependencies.xml @ 2:e627be2bba58 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
author iuc
date Thu, 14 May 2015 22:46:29 -0400
parents f3b301780e36
children f5582ac5ba3c
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1:f3b301780e36 2:e627be2bba58
8 <action type="move_directory_files"> 8 <action type="move_directory_files">
9 <source_directory>.</source_directory> 9 <source_directory>.</source_directory>
10 <destination_directory>$INSTALL_DIR</destination_directory> 10 <destination_directory>$INSTALL_DIR</destination_directory>
11 </action> 11 </action>
12 </actions> 12 </actions>
13 <actions>
14 <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.5/bowtie2-2.2.5-source.zip</action>
15 <action type="shell_command">make</action>
16 <action type="move_file">
17 <source>bowtie2</source>
18 <destination>$INSTALL_DIR/bin</destination>
19 </action>
20 <action type="move_file">
21 <source>bowtie2-build</source>
22 <destination>$INSTALL_DIR/bin</destination>
23 </action>
24 <action type="move_file">
25 <source>bowtie2-inspect</source>
26 <destination>$INSTALL_DIR/bin</destination>
27 </action>
28 <action type="move_file">
29 <source>bowtie</source>
30 <destination>$INSTALL_DIR/bin</destination>
31 </action>
32 <action type="move_file">
33 <source>bowtie-build</source>
34 <destination>$INSTALL_DIR/bin</destination>
35 </action>
36 <action type="move_file">
37 <source>bowtie-inspect</source>
38 <destination>$INSTALL_DIR/bin</destination>
39 </action>
40 </actions>
13 <action type="set_environment"> 41 <action type="set_environment">
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 42 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
15 </action> 43 </action>
16 </actions_group> 44 </actions_group>
17 </install> 45 </install>