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1 <?xml version="1.0"?>
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2 <tool_dependency>
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1
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3 <package name="cmake" version="3.2.3">
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4
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4 <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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1
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5 </package>
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6 <package name="icqsol" version="1.0">
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7 <install version="1.0">
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8 <actions_group>
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1
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9 <actions architecture="x86_64" os="linux">
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10 <!-- Install and compile Anaconda 2.3.0 which provides Python 2.7.10 -->
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11 <action target_filename="Anaconda-2.3.0-Linux-x86_64.sh" type="download_file">https://3230d63b5fc54e62148e-c95ac804525aac4b6dba79b00b39d1d3.ssl.cf1.rackcdn.com/Anaconda-2.3.0-Linux-x86_64.sh</action>
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3
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12
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1
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13 <action type="set_environment_for_install">
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4
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14 <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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15 <package name="cmake" version="3.2.3" />
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16 </repository>
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17 </action>
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18
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19 <action type="shell_command">bash Anaconda-2.3.0-Linux-x86_64.sh -b -f -p $INSTALL_DIR</action>
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20
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6
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21 <!-- Install VTK 6.3.0 into the above Python -->
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22 <action type="make_directory">$TMP_WORK_DIR/vtk</action>
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23 <action type="change_directory">$TMP_WORK_DIR/vtk</action>
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5
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24 <action target_filename="VTK-6.3.0.tar.gz" type="download_file">http://www.vtk.org/files/release/6.3/VTK-6.3.0.tar.gz</action>
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25 <action type="shell_command">tar xfvz VTK-6.3.0.tar.gz</action>
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26 <action type="change_directory">VTK-6.3.0</action>
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27 <action type="shell_command">
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28
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29 export PATH=$INSTALL_DIR/bin:$PATH &&
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4
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30 export PYTHONPATH=$INSTALL_DIR:$PYTHONPATH &&
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31 export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &&
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32 cmake \
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33 -DCMAKE_BUILD_TYPE:STRING=Release \
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34 -DCMAKE_INSTALL_PREFIX:PATH=`pwd`/../build \
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4
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35 -DVTK_WRAP_PYTHON:BOOL=ON \
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36 -DVTK_Group_StandAlone:BOOL=OFF \
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37 -DVTK_Group_Rendering:BOOL=OFF \
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38 -DModule_vtkCommonColor:BOOL=ON \
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39 -DModule_vtkCommonComputationalGeometry:BOOL=ON \
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40 -DModule_vtkCommonDataModel:BOOL=ON \
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41 -DModule_vtkCommonExecutionModel:BOOL=ON \
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42 -DModule_vtkCommonMath:BOOL=ON \
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43 -DModule_vtkCommonMisc:BOOL=ON \
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44 -DModule_vtkCommonSystem:BOOL=ON \
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45 -DModule_vtkCommonTransforms:BOOL=ON \
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46 -DModule_vtkFiltersCore:BOOL=ON \
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47 -DModule_vtkFiltersExtraction:BOOL=ON \
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48 -DModule_vtkFiltersGeneral:BOOL=ON \
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49 -DModule_vtkFiltersGeneric:BOOL=ON \
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50 -DModule_vtkFiltersGeometry:BOOL=ON \
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51 -DModule_vtkFiltersPython:BOOL=ON \
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52 -DModule_vtkImagingHybrid:BOOL=ON \
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53 -DModule_vtkIOCore:BOOL=ON \
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54 -DModule_vtkIOGeometry:BOOL=ON \
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55 -DModule_vtkIOLegacy:BOOL=ON \
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56 -DModule_vtkWrappingPythonCore:BOOL=ON \
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57 -DModule_vtkIOPLY:BOOL=ON \
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58 -DVTK_INSTALL_PYTHON_MODULE_DIR:PATH=$INSTALL_DIR/lib/python2.7/site-packages \
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59 -DPYTHON_EXECUTABLE:PATH=$INSTALL_DIR/bin/python \
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60 -DPYTHON_LIBRARY:PATH=$INSTALL_DIR/lib/libpython2.7.so \
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61 -DPYTHON_INCLUDE_DIR:PATH=$INSTALL_DIR/include/python2.7 . &&
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62 make &&
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63 make install
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64
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65 </action>
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66 <action type="move_directory_files">
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67 <source_directory>../build/bin</source_directory>
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68 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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69 </action>
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70 <action type="move_directory_files">
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71 <source_directory>../build/include</source_directory>
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72 <destination_directory>$INSTALL_DIR/include</destination_directory>
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73 </action>
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74 <action type="move_directory_files">
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75 <source_directory>../build/lib</source_directory>
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76 <destination_directory>$INSTALL_DIR/lib</destination_directory>
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77 </action>
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78
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79 <!-- Install and compile icqsol version 1.0 as a package in the above Python -->
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80 <action type="make_directory">$TMP_WORK_DIR/icqsol</action>
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81 <action type="change_directory">$TMP_WORK_DIR/icqsol</action>
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82 <action type="shell_command">git clone https://github.com/pletzer/icqsol.git</action>
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83 <action type="change_directory">icqsol</action>
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84 <action type="shell_command">
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85
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86 export PATH=$INSTALL_DIR/bin:$PATH &&
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87 export VTK_INCLUDE_DIR=$INSTALL_DIR/vtk/include/vtk-6.3 &&
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88 export VTK_LIBRARY_DIR=$INSTALL_DIR/vtk/lib &&
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89 $INSTALL_DIR/bin/python setup.py develop --prefix=$INSTALL_DIR
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90 $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
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91
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92 </action>
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93
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94 <action type="set_environment">
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95 <!--
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96 Only the PATH environment variable needs to be modified for an Anaconda environment so that it gets
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97 the right Python from the environment bin directory.
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98 -->
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99 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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100 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
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101 <environment_variable action="set_to" name="ICQSOL_ROOT_DIR">$INSTALL_DIR</environment_variable>
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102 </action>
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103 </actions>
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104
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105 <actions architecture="x86_64" os="darwin">
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106 <!-- Install and compile Anaconda 2.3.0 which provides Python 2.7.10 -->
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1
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107 <action target_filename="Anaconda-2.3.0-MacOSX-x86_64.sh" type="download_file">https://3230d63b5fc54e62148e-c95ac804525aac4b6dba79b00b39d1d3.ssl.cf1.rackcdn.com/Anaconda-2.3.0-MacOSX-x86_64.sh</action>
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3
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108
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109 <action type="set_environment_for_install">
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110 <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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111 <package name="cmake" version="3.2.3" />
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112 </repository>
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113 </action>
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3
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114
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115 <action type="shell_command">bash Anaconda-2.3.0-MacOSX-x86_64.sh -b -f -p $INSTALL_DIR</action>
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116
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117 <!-- Install and compile VTK 6.3.0 as a package in the above Python -->
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118 <action type="make_directory">$TMP_WORK_DIR/vtk</action>
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119 <action type="change_directory">$TMP_WORK_DIR/vtk</action>
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120 <action target_filename="VTK-6.3.0.tar.gz" type="download_file">http://www.vtk.org/files/release/6.3/VTK-6.3.0.tar.gz</action>
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121 <action type="shell_command">tar xfvz VTK-6.3.0.tar.gz</action>
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122 <action type="change_directory">VTK-6.3.0</action>
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123 <action type="shell_command">
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124
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6
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125 export PATH=$INSTALL_DIR/bin:$PATH &&
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126 export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &&
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127 cmake \
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128 -DCMAKE_BUILD_TYPE:STRING=Release \
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129 -DCMAKE_INSTALL_PREFIX:PATH=`pwd`/../build \
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130 -DVTK_WRAP_PYTHON:BOOL=ON \
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131 -DVTK_Group_StandAlone:BOOL=OFF \
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132 -DVTK_Group_Rendering:BOOL=OFF \
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133 -DModule_vtkCommonColor:BOOL=ON \
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134 -DModule_vtkCommonComputationalGeometry:BOOL=ON \
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135 -DModule_vtkCommonDataModel:BOOL=ON \
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136 -DModule_vtkCommonExecutionModel:BOOL=ON \
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137 -DModule_vtkCommonMath:BOOL=ON \
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138 -DModule_vtkCommonMisc:BOOL=ON \
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139 -DModule_vtkCommonSystem:BOOL=ON \
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140 -DModule_vtkCommonTransforms:BOOL=ON \
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141 -DModule_vtkFiltersCore:BOOL=ON \
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142 -DModule_vtkFiltersExtraction:BOOL=ON \
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143 -DModule_vtkFiltersGeneral:BOOL=ON \
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144 -DModule_vtkFiltersGeneric:BOOL=ON \
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145 -DModule_vtkFiltersGeometry:BOOL=ON \
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146 -DModule_vtkFiltersPython:BOOL=ON \
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147 -DModule_vtkImagingHybrid:BOOL=ON \
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148 -DModule_vtkIOCore:BOOL=ON \
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149 -DModule_vtkIOGeometry:BOOL=ON \
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150 -DModule_vtkIOLegacy:BOOL=ON \
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151 -DModule_vtkWrappingPythonCore:BOOL=ON \
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152 -DModule_vtkIOPLY:BOOL=ON \
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153 -DVTK_INSTALL_PYTHON_MODULE_DIR:PATH=$INSTALL_DIR/lib/python2.7/site-packages \
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154 -DPYTHON_EXECUTABLE:PATH=$INSTALL_DIR/bin/python \
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155 -DPYTHON_LIBRARY:PATH=$INSTALL_DIR/lib/libpython2.7.dylib \
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156 -DPYTHON_INCLUDE_DIR:PATH=$INSTALL_DIR/include/python2.7 . &&
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157 make &&
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158 make install
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159
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160 </action>
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161 <action type="move_directory_files">
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162 <source_directory>../build/bin</source_directory>
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163 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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164 </action>
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165 <action type="move_directory_files">
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166 <source_directory>../build/include</source_directory>
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167 <destination_directory>$INSTALL_DIR/include</destination_directory>
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168 </action>
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169 <action type="move_directory_files">
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170 <source_directory>../build/lib</source_directory>
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171 <destination_directory>$INSTALL_DIR/lib</destination_directory>
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172 </action>
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173
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174 <!-- Install and compile icqsol version 1.0 as a package in the above Python -->
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175 <action type="make_directory">$TMP_WORK_DIR/icqsol</action>
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176 <action type="change_directory">$TMP_WORK_DIR/icqsol</action>
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177 <action type="shell_command">git clone https://github.com/pletzer/icqsol.git</action>
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178 <action type="change_directory">icqsol</action>
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179 <action type="shell_command">
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180
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181 export PATH=$INSTALL_DIR/bin:$PATH &&
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182 export VTK_INCLUDE_DIR=$INSTALL_DIR/vtk/include/vtk-6.3 &&
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183 export VTK_LIBRARY_DIR=$INSTALL_DIR/vtk/lib &&
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184 $INSTALL_DIR/bin/python setup.py develop --prefix=$INSTALL_DIR &&
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185 $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
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186
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0
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187 </action>
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188
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189 <action type="set_environment">
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190 <!--
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191 Only the PATH environment variable needs to be modified for an Anaconda environment so that it gets
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192 the right Python from the environment bin directory. The way Anaconda environments work is that they
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193 hard link everything that is installed into the environment. For all intents and purposes, this means
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194 that each environment is a completely separate installation of Python and all the packages. By using
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195 hard links, this is done efficiently. Thus, there's no need to mess with PYTHONPATH because the Python
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196 binary in the environment already searches the site-packages in the environment, and the lib of the
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197 environment, and so on.
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198 -->
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199 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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200 <environment_variable action="prepend_to" name="DYLD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
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201 <environment_variable action="set_to" name="ICQSOL_ROOT_DIR">$INSTALL_DIR</environment_variable>
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202 </action>
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203 </actions>
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204 </actions_group>
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205 </install>
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206 <readme>
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207
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208 This installation recipe installs the Anaconda version 2.3.0 of the Python programming language
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209 version 2.7.10. Anaconda is a completely free Python distribution (including for commercial use
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210 and redistribution). It includes more than 300 of the most popular Python packages for science,
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211 math, engineering, and data analysis. This list of packages is available at
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212 http://docs.continuum.io/anaconda/pkg-docs.
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213
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214 1) VTK version 6.3.0
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215
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216 The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D
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217 computer graphics, modeling, image processing, volume rendering, scientific visualization, and
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218 information visualization. VTK also includes ancillary support for 3D interaction widgets, two-
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219 and three-dimensional annotation, and parallel computing. At its core, VTK is implemented as a
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220 C++ toolkit, requiring users to build applications by combining various objects into an application.
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221 The system also supports automated wrapping of the C++ core into Python, Java, and Tcl, so VTK
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222 applications may also be written using these interpreted programming languages.
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223
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224 VTK employs Kitware’s Quality Software Process (CMake, CTest, CDash, and CPack) to build, test,
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225 and package the system, making VTK a cross-platform application dependent on test-driven development
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226 and extreme programming, and enabling the application to produce high-quality, robust code. VTK is
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227 used world-wide in commercial applications, as well as in research and development. It is the basis
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228 for many advanced visualization applications such as ParaView, VisIt, VisTrails, Slicer, MayaVi, and
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229 OsiriX.
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230
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231 3) Pycsg version 0.3.0
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232
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233 Constructive Solid Geometry (CSG) is a modeling technique that uses Boolean operations like union and
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234 intersection to combine 3D solids. This library implements CSG operations on meshes elegantly and
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235 concisely using BSP trees, and is meant to serve as an easily understandable implementation of the
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236 algorithm. All edge cases involving overlapping coplanar polygons in both solids are correctly handled.
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237
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238 4) Pytriangle version 1.0
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239
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240 Pytriangle is a python interface to the 2D triangulation program originally written by Jonathan Richard Shewchuck
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241
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242 5) Icqsol version 1.0
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243
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244 Icqsol is a collection of tools for constructing and solving partial differential equations.
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1
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245
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0
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246
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247 </readme>
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248 </package>
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249 </tool_dependency>
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