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1 <?xml version="1.0"?>
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2 <tool_dependency>
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1
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3 <package name="cmake" version="3.2.3">
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4 <repository changeset_revision="e932c7599efd" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="icqsol" version="1.0">
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7 <install version="1.0">
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8 <actions_group>
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9 <actions architecture="x86_64" os="linux">
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10 <!-- Install and compile Anaconda 2.3.0 which provides Python 2.7.10 -->
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11 <action target_filename="Anaconda-2.3.0-Linux-x86_64.sh" type="download_file">https://3230d63b5fc54e62148e-c95ac804525aac4b6dba79b00b39d1d3.ssl.cf1.rackcdn.com/Anaconda-2.3.0-Linux-x86_64.sh</action>
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12
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13 <action type="set_environment_for_install">
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14 <repository changeset_revision="e932c7599efd" name="package_cmake_3_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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15 <package name="cmake" version="3.2.3" />
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16 </repository>
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17 </action>
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18
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19 <action type="shell_command">bash Anaconda-2.3.0-Linux-x86_64.sh -b -f -p $INSTALL_DIR</action>
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20
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21 <!-- Install VTK 6.3.0 into the above Python -->
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22 <action type="shell_command">
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1
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23
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24 export PATH=$INSTALL_DIR/bin:$PATH &&
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25 export PYTHONPATH=$INSTALL_DIR/lib/python2.7/site-packages:$INSTALL_DIR/lib/python2.7:$INSTALL_DIR/lib:$INSTALL_DIR:$PYTHONPATH &&
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26 export LD_LIBRARY_PATH=$INSTALL_DIR/lib:$LD_LIBRARY_PATH &&
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27 export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &&
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28 conda install -c https://conda.anaconda.org/anaconda vtk --yes
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29
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30 </action>
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31
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32 <!-- Install and compile pycsg version 0.3.0 as a package in the above Python -->
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33 <action type="make_directory">$TMP_WORK_DIR/pycsg</action>
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34 <action type="change_directory">$TMP_WORK_DIR/pycsg</action>
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35 <action type="shell_command">git clone https://github.com/pletzer/pycsg.git</action>
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36 <action type="change_directory">pycsg</action>
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37 <action type="shell_command">
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38
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39 export PATH=$INSTALL_DIR/bin:$PATH &&
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40 export PYTHONPATH=$INSTALL_DIR/lib/python2.7/site-packages:$INSTALL_DIR/lib/python2.7:$INSTALL_DIR/lib:$INSTALL_DIR:$PYTHONPATH &&
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41 export LD_LIBRARY_PATH=$INSTALL_DIR/lib:$LD_LIBRARY_PATH &&
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42 export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &&
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43 $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
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44
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45 </action>
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46
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47 <!-- Install and compile pytriangle version 1.0 as a package in the above Python -->
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48 <action type="make_directory">$TMP_WORK_DIR/pytriangle</action>
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49 <action type="change_directory">$TMP_WORK_DIR/pytriangle</action>
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50 <action type="shell_command">git clone https://github.com/pletzer/pytriangle.git</action>
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51 <action type="change_directory">pytriangle</action>
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52 <action type="shell_command">
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53
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54 export PATH=$INSTALL_DIR/bin:$PATH &&
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55 export PYTHONPATH=$INSTALL_DIR/lib/python2.7/site-packages:$INSTALL_DIR/lib/python2.7:$INSTALL_DIR/lib:$INSTALL_DIR:$PYTHONPATH &&
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56 export LD_LIBRARY_PATH=$INSTALL_DIR/lib:$LD_LIBRARY_PATH &&
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57 export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &&
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58 $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
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59
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60 </action>
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61
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62 <!-- Install and compile icqsol version 1.0 as a package in the above Python -->
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63 <action type="make_directory">$TMP_WORK_DIR/icqsol</action>
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64 <action type="change_directory">$TMP_WORK_DIR/icqsol</action>
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65 <action type="shell_command">git clone https://github.com/pletzer/icqsol.git</action>
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66 <action type="change_directory">icqsol</action>
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67 <action type="shell_command">
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68
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69 export PATH=$INSTALL_DIR/bin:$PATH &&
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70 export PYTHONPATH=$INSTALL_DIR/lib/python2.7/site-packages:$INSTALL_DIR/lib/python2.7:$INSTALL_DIR/lib:$INSTALL_DIR:$PYTHONPATH &&
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71 export LD_LIBRARY_PATH=$INSTALL_DIR/lib:$LD_LIBRARY_PATH &&
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72 cmake -DINSTALL_USER=OFF -DINSTALL_PREFIX=ON -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR
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73
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74 </action>
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75
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76 <action type="set_environment">
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77 <!--
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78 Only the PATH environment variable needs to be modified for an Anaconda environment so that it gets
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79 the right Python from the environment bin directory.
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80 -->
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81 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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82 <environment_variable action="set_to" name="ANACONDAHOME">$INSTALL_DIR</environment_variable>
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83 <environment_variable action="set_to" name="ICQSOL_ROOT_DIR">$INSTALL_DIR</environment_variable>
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84 </action>
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85 </actions>
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86
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87 <actions architecture="x86_64" os="darwin">
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88 <!-- Install and compile Anaconda 2.3.0 which provides Python 2.7.10 -->
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89 <action target_filename="Anaconda-2.3.0-MacOSX-x86_64.sh" type="download_file">https://3230d63b5fc54e62148e-c95ac804525aac4b6dba79b00b39d1d3.ssl.cf1.rackcdn.com/Anaconda-2.3.0-MacOSX-x86_64.sh</action>
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90 <action type="shell_command">bash Anaconda-2.3.0-MacOSX-x86_64.sh -b -f -p $INSTALL_DIR</action>
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91
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92 <!-- Install VTK 6.3.0 into the above Python -->
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93 <action type="shell_command">
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1
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94
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95 export PATH=$INSTALL_DIR/bin:$PATH &&
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96 export PYTHONPATH=$INSTALL_DIR/lib/python2.7/site-packages:$INSTALL_DIR/lib/python2.7:$INSTALL_DIR/lib:$INSTALL_DIR:$PYTHONPATH &&
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97 export DYLD_LIBRARY_PATH=$INSTALL_DIR/lib:$DYLD_LIBRARY_PATH &&
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98 export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &&
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99 conda install -c https://conda.anaconda.org/anaconda vtk --yes
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1
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100
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101 </action>
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102 <action type="shell_command">
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103 ln -s $INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin/vtkpython $INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin/python
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104 </action>
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105
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106 <!-- Install and compile pycsg version 0.3.0 as a package in the above Python -->
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107 <action type="make_directory">$TMP_WORK_DIR/pycsg</action>
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108 <action type="change_directory">$TMP_WORK_DIR/pycsg</action>
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109 <action type="shell_command">git clone https://github.com/pletzer/pycsg.git</action>
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110 <action type="change_directory">pycsg</action>
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111 <action type="shell_command">
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1
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112
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113 export PATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin:$PATH &&
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114 export PYTHONPATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib/python2.7/site-packages:$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib/python2.7:pkgs/vtk-6.3.0-py27_0/lib:$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin &&
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115 export DYLD_LIBRARY_PATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib:$DYLD_LIBRARY_PATH &&
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116 export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &&
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117 $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
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118
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119 </action>
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120
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121 <!-- Install and compile pytriangle version 1.0 as a package in the above Python -->
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122 <action type="make_directory">$TMP_WORK_DIR/pytriangle</action>
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123 <action type="change_directory">$TMP_WORK_DIR/pytriangle</action>
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124 <action type="shell_command">git clone https://github.com/pletzer/pytriangle.git</action>
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125 <action type="change_directory">pytriangle</action>
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126 <action type="shell_command">
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127
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128 export PATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin:$PATH &&
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129 export PYTHONPATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib/python2.7/site-packages:$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib/python2.7:pkgs/vtk-6.3.0-py27_0/lib:$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin &&
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130 export DYLD_LIBRARY_PATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib:$DYLD_LIBRARY_PATH &&
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131 export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH
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132 $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
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133
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134 </action>
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135
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136 <!-- Install and compile icqsol version 1.0 as a package in the above Python -->
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137 <action type="make_directory">$TMP_WORK_DIR/icqsol</action>
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138 <action type="change_directory">$TMP_WORK_DIR/icqsol</action>
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139 <action type="shell_command">git clone https://github.com/pletzer/icqsol.git</action>
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140 <action type="change_directory">icqsol</action>
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141 <action type="shell_command">
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142
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143 export PATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin:$PATH &&
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144 export PYTHONPATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib/python2.7/site-packages:$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib/python2.7:pkgs/vtk-6.3.0-py27_0/lib:$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin &&
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145 export DYLD_LIBRARY_PATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib:$DYLD_LIBRARY_PATH &&
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146 cmake -DINSTALL_USER=OFF -DINSTALL_PREFIX=ON -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR
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147
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148 </action>
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149
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150 <action type="set_environment">
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151 <!--
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152 Only the PATH environment variable needs to be modified for an Anaconda environment so that it gets
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153 the right Python from the environment bin directory. The way Anaconda environments work is that they
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154 hard link everything that is installed into the environment. For all intents and purposes, this means
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155 that each environment is a completely separate installation of Python and all the packages. By using
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156 hard links, this is done efficiently. Thus, there's no need to mess with PYTHONPATH because the Python
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157 binary in the environment already searches the site-packages in the environment, and the lib of the
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158 environment, and so on.
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159 -->
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160 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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161 <environment_variable action="set_to" name="ANACONDAHOME">$INSTALL_DIR</environment_variable>
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162 <environment_variable action="set_to" name="ICQSOL_ROOT_DIR">$INSTALL_DIR</environment_variable>
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163 </action>
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164 </actions>
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165 </actions_group>
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166 </install>
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167 <readme>
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1
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168
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169 This installation recipe installs the Anaconda version 2.3.0 of the Python programming language
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170 version 2.7.10. Anaconda is a completely free Python distribution (including for commercial use
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171 and redistribution). It includes more than 300 of the most popular Python packages for science,
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172 math, engineering, and data analysis. This list of packages is available at
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173 http://docs.continuum.io/anaconda/pkg-docs.
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174
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175 1) VTK version 6.3.0
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176
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177 The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D
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178 computer graphics, modeling, image processing, volume rendering, scientific visualization, and
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179 information visualization. VTK also includes ancillary support for 3D interaction widgets, two-
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180 and three-dimensional annotation, and parallel computing. At its core, VTK is implemented as a
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181 C++ toolkit, requiring users to build applications by combining various objects into an application.
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182 The system also supports automated wrapping of the C++ core into Python, Java, and Tcl, so VTK
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183 applications may also be written using these interpreted programming languages.
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184
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185 VTK employs Kitware’s Quality Software Process (CMake, CTest, CDash, and CPack) to build, test,
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186 and package the system, making VTK a cross-platform application dependent on test-driven development
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187 and extreme programming, and enabling the application to produce high-quality, robust code. VTK is
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188 used world-wide in commercial applications, as well as in research and development. It is the basis
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189 for many advanced visualization applications such as ParaView, VisIt, VisTrails, Slicer, MayaVi, and
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190 OsiriX.
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191
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192 3) Pycsg version 0.3.0
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193
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194 Constructive Solid Geometry (CSG) is a modeling technique that uses Boolean operations like union and
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195 intersection to combine 3D solids. This library implements CSG operations on meshes elegantly and
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196 concisely using BSP trees, and is meant to serve as an easily understandable implementation of the
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197 algorithm. All edge cases involving overlapping coplanar polygons in both solids are correctly handled.
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198
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199 4) Pytriangle version 1.0
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200
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201 Pytriangle is a python interface to the 2D triangulation program originally written by Jonathan Richard Shewchuck
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202
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203 5) Icqsol version 1.0
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204
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205 Icqsol is a collection of tools for constructing and solving partial differential equations.
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206
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207
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208 </readme>
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209 </package>
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210 </tool_dependency>
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