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annotate rgedgeR/tool_dependencies.xml @ 36:46c91da1351e draft

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author fubar
date Thu, 13 Jun 2013 00:01:11 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <set_environment version="1.0">
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4 <environment_variable action="set_to" name="R_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
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5 </set_environment>
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6 <package name="package_r3" version="3.0.1">
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7 <repository changeset_revision="addf8c9c778a" name="package_r3" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
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8 </package>
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9 <package name="biocbasics" version="2.12">
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10 <install version="1.0">
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11 <actions>
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12 <action type="set_environment_for_install">
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13 <repository changeset_revision="addf8c9c778a" name="package_r3" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/">
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14 <package name="r3" version="3.0.1" />
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15 </repository>
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16 </action>
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17 <action type="shell_command">R CMD BATCH $R_SCRIPT_PATH/rgedgeR/installBioC.R </action>
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18 </actions>
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19 </install>
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20 <readme>Installs some basic bioc packages for the edgeR tool
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21 </readme>
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22 </package>
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23 </tool_dependency>