edger_test: rgedgeR/tool_dependencies.xml annotate

annotate rgedgeR/tool_dependencies.xml @ 20:3b3066dea1a7 draft

Uploaded

author	fubar
date	Wed, 12 Jun 2013 08:54:58 -0400
parents	0d6a14ee7c81
children	1a0934f5eb95

rev	line source
0 82e0af566160 Uploaded fubar parents: diff changeset	1 <?xml version="1.0"?>
2 515a5e61874c Uploaded fubar parents: 0 diff changeset	2 <tool_dependency>
0 82e0af566160 Uploaded fubar parents: diff changeset	3 <package name="package_BioCBasics" version="2.12">
19 0d6a14ee7c81 Uploaded fubar parents: 18 diff changeset	4 <install version="1.0">
0 82e0af566160 Uploaded fubar parents: diff changeset	5 <actions>
11 c788c8078338 Uploaded fubar parents: 8 diff changeset	6 <action type="set_environment_for_install">
18 3f316c8adf4c Uploaded fubar parents: 17 diff changeset	7 <package name="R3" toolshed="http://testtoolshed.g2.bx.psu.edu" version="3.0.1">
20 3b3066dea1a7 Uploaded fubar parents: 19 diff changeset	8 <repository name="package_R3" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
18 3f316c8adf4c Uploaded fubar parents: 17 diff changeset	9 </package>
3f316c8adf4c Uploaded fubar parents: 17 diff changeset	10
11 c788c8078338 Uploaded fubar parents: 8 diff changeset	11 </action>
18 3f316c8adf4c Uploaded fubar parents: 17 diff changeset	12 <action type="shell_command">$R_HOME/R CMD BATCH installBioC.R </action>
0 82e0af566160 Uploaded fubar parents: diff changeset	13 </actions>
82e0af566160 Uploaded fubar parents: diff changeset	14 </install>
19 0d6a14ee7c81 Uploaded fubar parents: 18 diff changeset	15 <readme>Installs some basic bioc packages for the edgeR tool
0d6a14ee7c81 Uploaded fubar parents: 18 diff changeset	16
0 82e0af566160 Uploaded fubar parents: diff changeset	17 </readme>
82e0af566160 Uploaded fubar parents: diff changeset	18 </package>
82e0af566160 Uploaded fubar parents: diff changeset	19 </tool_dependency>