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view rgedgeR/tool_dependencies.xml @ 36:46c91da1351e draft

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author fubar
date Thu, 13 Jun 2013 00:01:11 -0400
parents bbc8a94b5311
children faf413433dca
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<?xml version="1.0"?>
<tool_dependency>
     <set_environment version="1.0">
        <environment_variable action="set_to" name="R_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>   
    </set_environment>
    <package name="package_r3" version="3.0.1">
        <repository changeset_revision="addf8c9c778a" name="package_r3" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
    </package>
    <package name="biocbasics" version="2.12">
        <install version="1.0"> 
            <actions>
                <action type="set_environment_for_install">
                    <repository changeset_revision="addf8c9c778a" name="package_r3" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/">
                        <package name="r3" version="3.0.1" />
                    </repository>
                </action>
                <action type="shell_command">R CMD BATCH $R_SCRIPT_PATH/rgedgeR/installBioC.R </action>
            </actions>
        </install>
        <readme>Installs some basic bioc packages for the edgeR tool
       </readme>
    </package>
</tool_dependency>