Mercurial > repos > davidvanzessen > igparse
annotate igparse.xml @ 4:2390c4eabd24 draft default tip
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| author | davidvanzessen |
|---|---|
| date | Thu, 23 Jan 2014 04:24:09 -0500 |
| parents | a6a01df3aff6 |
| children |
| rev | line source |
|---|---|
| 4 | 1 <tool id="igblastparser_igg" name="igBLASTparser" version="0.2.0"> |
| 2 <description> </description> | |
| 2 | 3 <command interpreter="perl"> |
| 3 | 4 igparse.pl $input 0 | grep -v "D:" | cut -f2- > $output |
| 0 | 5 </command> |
| 6 <inputs> | |
| 7 <param name="input" type="data" format="text" label="igBLASTn report"/> | |
| 8 </inputs> | |
| 9 <outputs> | |
| 10 <data name="output" format="tabular" label="${input.name}-parsed" /> | |
| 11 </outputs> | |
| 12 <help> | |
| 3 | 13 Step 2 of the Immune Repertoire tools, extracts the relevant information needed from the reports generated by igblast (Step 1) |
| 0 | 14 </help> |
| 15 </tool> |