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1 <tool id="igparse" name="igBLASTreport parser" version="0.2.0">
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2 <description>Parse igBLASTn report (output format -m 3)</description>
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3 <command>
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1
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4 perl igparse.pl $input $record | grep -v "D:" | cut -f2- > $output
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5 </command>
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6 <inputs>
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7 <param name="input" type="data" format="text" label="igBLASTn report"/>
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8 <param name="record" type="integer" value="0" label="Choose a single record or 0 for all">
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9 <validator type="in_range" min="0" max="1000000" />
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10 </param>
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11 </inputs>
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12 <outputs>
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13 <data name="output" format="tabular" label="${input.name}-parsed" />
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14 </outputs>
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15 <help>
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16 there is no help
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17 </help>
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18 </tool>
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