diff igparse.xml @ 0:07cd591055fb draft

Uploaded
author davidvanzessen
date Mon, 23 Sep 2013 08:59:50 -0400
parents
children d55fb6a8df5a
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/igparse.xml	Mon Sep 23 08:59:50 2013 -0400
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+<tool id="igparse" name="igBLASTreport parser" version="0.2.0">
+	<description>Parse igBLASTn report (output format -m 3)</description>
+	<command>
+		perl /usr/local/galaxy/galaxy-dist/tools/igblast/igparse/igparse.pl $input $record | grep -v "D:" | cut -f2- > $output
+	</command>
+	<inputs>
+		<param name="input" type="data" format="text" label="igBLASTn report"/>
+		<param name="record" type="integer" value="0" label="Choose a single record or 0 for all">
+			<validator type="in_range" min="0" max="1000000" />
+		</param>
+	</inputs>
+	<outputs>
+		<data name="output" format="tabular" label="${input.name}-parsed" />
+	</outputs>
+	<help>
+		there is no help
+	</help>
+</tool>