Mercurial > repos > davidvanzessen > igparse
diff igparse.xml @ 0:07cd591055fb draft
Uploaded
author | davidvanzessen |
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date | Mon, 23 Sep 2013 08:59:50 -0400 |
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children | d55fb6a8df5a |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/igparse.xml Mon Sep 23 08:59:50 2013 -0400 @@ -0,0 +1,18 @@ +<tool id="igparse" name="igBLASTreport parser" version="0.2.0"> + <description>Parse igBLASTn report (output format -m 3)</description> + <command> + perl /usr/local/galaxy/galaxy-dist/tools/igblast/igparse/igparse.pl $input $record | grep -v "D:" | cut -f2- > $output + </command> + <inputs> + <param name="input" type="data" format="text" label="igBLASTn report"/> + <param name="record" type="integer" value="0" label="Choose a single record or 0 for all"> + <validator type="in_range" min="0" max="1000000" /> + </param> + </inputs> + <outputs> + <data name="output" format="tabular" label="${input.name}-parsed" /> + </outputs> + <help> + there is no help + </help> +</tool>