<tool id="igparse" name="igBLASTreport parser" version="0.2.0">
	<description>Parse igBLASTn report (output format -m 3)</description>
	<command interpreter="perl">
		igparse.pl $input 0 | grep -v "D:" | cut -f2- > $output
	</command>
	<inputs>
		<param name="input" type="data" format="text" label="igBLASTn report"/>
	</inputs>
	<outputs>
		<data name="output" format="tabular" label="${input.name}-parsed" />
	</outputs>
	<help>
		Step 2 of the Immune Repertoire tools, extracts the relevant information needed from the reports generated by igblast (Step 1)
	</help>
</tool>