Mercurial > repos > davidvanzessen > igparse

changeset 3:a6a01df3aff6 draft

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Uploaded
author davidvanzessen
date Fri, 01 Nov 2013 11:23:17 -0400
parents c86b568de930
children 2390c4eabd24
files igparse.xml
diffstat 1 files changed, 2 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/igparse.xml	Thu Sep 26 11:09:57 2013 -0400
+++ b/igparse.xml	Fri Nov 01 11:23:17 2013 -0400
@@ -1,18 +1,15 @@
 <tool id="igparse" name="igBLASTreport parser" version="0.2.0">
 	<description>Parse igBLASTn report (output format -m 3)</description>
 	<command interpreter="perl">
-		igparse.pl $input $record | grep -v "D:" | cut -f2- > $output
+		igparse.pl $input 0 | grep -v "D:" | cut -f2- > $output
 	</command>
 	<inputs>
 		<param name="input" type="data" format="text" label="igBLASTn report"/>
-		<param name="record" type="integer" value="0" label="Choose a single record or 0 for all">
-			<validator type="in_range" min="0" max="1000000" />
-		</param>
 	</inputs>
 	<outputs>
 		<data name="output" format="tabular" label="${input.name}-parsed" />
 	</outputs>
 	<help>
-		there is no help
+		Step 2 of the Immune Repertoire tools, extracts the relevant information needed from the reports generated by igblast (Step 1)
 	</help>
 </tool>