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0
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <set_environment version="1.0">
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4 </set_environment>
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5
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1
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6 <package name="igBlastn" version="1.0.0">
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0
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7 <install version="1.0">
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8 <actions>
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7
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9 <action type="download_by_url">
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10 ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz
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11 </action>
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2
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12 <action type="move_file">
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13 <source>ncbi-igblast-1.0.0-x64-linux.tar.gz</source>
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14 <destination>$INSTALL_DIR</destination>
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15 </action>
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7
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16 <action type="shell_command">
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17 tar -zxvf $INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux.tar.gz -C $INSTALL_DIR
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18 </action>
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0
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19
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20 <action type="set_environment">
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6
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21 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable>
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22 </action>
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7
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23
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24 <action type="shell_command">
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25 wget -r -np -nH --cut-dirs=4 -R index.html "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/database"
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26 </action>
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8
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27 <action type="move_directory_files">
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7
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28 <source_directory>database</source_directory>
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29 <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0/database</destination_directory>
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30 </action>
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31
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32 <action type="shell_command">
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33 wget -r -np -nH --cut-dirs=4 -R index.html "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data"
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34 </action>
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8
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35 <action type="move_directory_files">
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7
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36 <source_directory>internal_data</source_directory>
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37 <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</destination_directory>
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38 </action>
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0
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39 </actions>
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40 </install>
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41 <readme>
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42 Installs R with apt-get.
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43 </readme>
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44 </package>
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45 </tool_dependency>
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46
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