Mercurial > repos > davidvanzessen > igblast_human

changeset 7:5576050e5d46 draft

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Uploaded
author davidvanzessen
date Tue, 24 Sep 2013 04:57:45 -0400
parents 433504d33b2c
children f5ce6ab5f082
files tool_dependencies.xml
diffstat 1 files changed, 22 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Sep 24 04:30:15 2013 -0400
+++ b/tool_dependencies.xml	Tue Sep 24 04:57:45 2013 -0400
@@ -6,16 +6,36 @@
 	<package name="igBlastn" version="1.0.0"> 
         <install version="1.0">
             <actions>
-            	<action type="download_by_url">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz</action>
+            	<action type="download_by_url">
+            		ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz
+            	</action>
             	<action type="move_file">
             		<source>ncbi-igblast-1.0.0-x64-linux.tar.gz</source>
             		<destination>$INSTALL_DIR</destination>
             	</action>
-                <action type="shell_command">tar -zxvf $INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux.tar.gz -C $INSTALL_DIR</action>
+                <action type="shell_command">
+                	tar -zxvf $INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux.tar.gz -C $INSTALL_DIR
+                </action>
                 
                 <action type="set_environment">
                 	<environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable>
                 </action>
+                
+                <action type="shell_command">
+                	wget -r -np -nH --cut-dirs=4 -R index.html "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/database"
+            	</action>
+            	<action type="move_directory_file">
+            		<source_directory>database</source_directory>
+            		<destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0/database</destination_directory>
+            	</action>
+            	
+            	<action type="shell_command">
+            		wget -r -np -nH --cut-dirs=4 -R index.html "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data"
+            	</action>
+            	<action type="move_directory_file">
+            		<source_directory>internal_data</source_directory>
+            		<destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</destination_directory>
+            	</action>
             </actions>
         </install>
         <readme>