|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <set_environment version="1.0">
|
|
|
4 </set_environment>
|
|
|
5
|
|
1
|
6 <package name="igBlastn" version="1.0.0">
|
|
0
|
7 <install version="1.0">
|
|
|
8 <actions>
|
|
7
|
9 <action type="download_by_url">
|
|
|
10 ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz
|
|
|
11 </action>
|
|
2
|
12 <action type="move_file">
|
|
|
13 <source>ncbi-igblast-1.0.0-x64-linux.tar.gz</source>
|
|
|
14 <destination>$INSTALL_DIR</destination>
|
|
|
15 </action>
|
|
7
|
16 <action type="shell_command">
|
|
|
17 tar -zxvf $INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux.tar.gz -C $INSTALL_DIR
|
|
|
18 </action>
|
|
0
|
19
|
|
|
20 <action type="set_environment">
|
|
6
|
21 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable>
|
|
0
|
22 </action>
|
|
7
|
23
|
|
|
24 <action type="shell_command">
|
|
|
25 wget -r -np -nH --cut-dirs=4 -R index.html "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/database"
|
|
|
26 </action>
|
|
|
27 <action type="move_directory_file">
|
|
|
28 <source_directory>database</source_directory>
|
|
|
29 <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0/database</destination_directory>
|
|
|
30 </action>
|
|
|
31
|
|
|
32 <action type="shell_command">
|
|
|
33 wget -r -np -nH --cut-dirs=4 -R index.html "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data"
|
|
|
34 </action>
|
|
|
35 <action type="move_directory_file">
|
|
|
36 <source_directory>internal_data</source_directory>
|
|
|
37 <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</destination_directory>
|
|
|
38 </action>
|
|
0
|
39 </actions>
|
|
|
40 </install>
|
|
|
41 <readme>
|
|
|
42 Installs R with apt-get.
|
|
|
43 </readme>
|
|
|
44 </package>
|
|
|
45 </tool_dependency>
|
|
|
46
|
