Mercurial > repos > yating-l > snap

annotate tool_dependencies.xml @ 12:c384398bfb1e draft

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author yating-l
date Fri, 22 Jul 2016 10:18:06 -0400
parents 48b892a5e117
children 044ad35b65ce
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="snap" version="0.1.0">
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4 <install version="1.0">
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5 <actions_group>
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6 <actions>
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7 <action type="download_by_url">http://korflab.ucdavis.edu/Software/snap-2013-11-29.tar.gz</action>
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8 <action type="shell_command">tar xvzf snap-2013-11-29.tar.gz</action>
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9 <action type="move_directory_files">
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10 <source_directory>.</source_directory>
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11 <destination_directory>$INSTALL_DIR</destination_directory>
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12 </action>
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13 <action type="shell_command">make</action>
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14 <action type="set_environment">
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15 <environment_variable name="ZOE" action="set_to">$INSTALL_DIR/HMM</environment_variable>
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16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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17 </action>
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18 </actions>
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19 </actions_group>
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20 </install>
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21 <readme>SNAP is a general purpose gene finding program suitable for both eukaryotic
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22 and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid
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23 Parser.
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24 </readme>
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25 </package>
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26 </tool_dependency>