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annotate tool_dependencies.xml @ 10:5a894cccfcd0 draft

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author yating-l
date Thu, 21 Jul 2016 19:13:36 -0400
parents 006081904eec
children 48b892a5e117
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="snap" version="0.1.0">
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4 <install version="1.0">
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5 <actions_group>
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6 <actions>
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7 <action type="download_by_url">http://korflab.ucdavis.edu/Software/snap-2013-11-29.tar.gz</action>
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8 <action type="move_directory_files">
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9 <source_directory>.</source_directory>
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10 <destination_directory>$INSTALL_DIR</destination_directory>
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11 </action>
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12 <action type="shell_command">make</action>
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13 <action type="set_environment">
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14 <environment_variable name="ZOE" action="set_to">$INSTALL_DIR/HMM</environment_variable>
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15 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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16 </action>
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17 </actions>
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18 </actions_group>
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19 </install>
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20 <readme>SNAP is a general purpose gene finding program suitable for both eukaryotic
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21 and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid
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22 Parser.
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23 </readme>
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24 </package>
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25 </tool_dependency>