diff tool_dependencies.xml @ 9:006081904eec draft

planemo upload commit d1ae46c18d1157b3dd74ac799911f5f232a53931-dirty
author yating-l
date Thu, 21 Jul 2016 19:07:30 -0400
parents 7107b7be52da
children 5a894cccfcd0
line wrap: on
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--- a/tool_dependencies.xml	Thu Jul 21 17:25:04 2016 -0400
+++ b/tool_dependencies.xml	Thu Jul 21 19:07:30 2016 -0400
@@ -1,6 +1,25 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="snap" version="0.1.0">
-        <repository changeset_revision="9b410d18d689" name="package_snap_0_1_0" owner="yating-l" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <install version="0.1.0">
+            <actions_group>
+                <actions>
+                    <action type="download_by_url">http://korflab.ucdavis.edu/Software/snap-2013-11-29.tar.gz</action>
+                    <action type="move_directory_files">
+                            <source_directory>.</source_directory>
+                            <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>
+                    <action type="shell_command">make</action>
+                    <action type="set_environment">
+                        <environment_variable name="ZOE" action="set_to">$INSTALL_DIR/HMM</environment_variable>
+                        <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                    </action>
+                </actions>
+            </actions_group>
+        </install>
+        <readme>SNAP is a general purpose gene finding program suitable for both eukaryotic
+            and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid
+            Parser.
+        </readme>
     </package>
 </tool_dependency>