Mercurial > repos > yating-l > snap
diff tool_dependencies.xml @ 9:006081904eec draft
planemo upload commit d1ae46c18d1157b3dd74ac799911f5f232a53931-dirty
| author | yating-l |
|---|---|
| date | Thu, 21 Jul 2016 19:07:30 -0400 |
| parents | 7107b7be52da |
| children | 5a894cccfcd0 |
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--- a/tool_dependencies.xml Thu Jul 21 17:25:04 2016 -0400 +++ b/tool_dependencies.xml Thu Jul 21 19:07:30 2016 -0400 @@ -1,6 +1,25 @@ <?xml version="1.0"?> <tool_dependency> <package name="snap" version="0.1.0"> - <repository changeset_revision="9b410d18d689" name="package_snap_0_1_0" owner="yating-l" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <install version="0.1.0"> + <actions_group> + <actions> + <action type="download_by_url">http://korflab.ucdavis.edu/Software/snap-2013-11-29.tar.gz</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="shell_command">make</action> + <action type="set_environment"> + <environment_variable name="ZOE" action="set_to">$INSTALL_DIR/HMM</environment_variable> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </actions_group> + </install> + <readme>SNAP is a general purpose gene finding program suitable for both eukaryotic + and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid + Parser. + </readme> </package> </tool_dependency>
