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annotate output.json @ 7:70895bec2486 draft

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planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Mon, 19 May 2025 14:04:56 +0000
parents f78651af72e4
children 4bfdec0be6b1
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
1 {
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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2 "summary": {
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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3 "num_errors": 0,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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4 "num_failures": 0,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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5 "num_skips": 0,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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6 "num_tests": 2
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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7 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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8 "tests": [
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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9 {
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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10 "data": {
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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11 "inputs": {
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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12 "adv|allow_edits": true,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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13 "adv|use_file_names_as_ids": true,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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14 "domestication_csv": {
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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15 "id": "22ea85fb92532e6e",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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16 "src": "hda"
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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17 },
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bf8cd9487e33 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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parents: 0
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18 "genbank_files": {
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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19 "id": "fc7b6f0086a57c46",
1
bf8cd9487e33 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents: 0
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20 "src": "hdca"
bf8cd9487e33 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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21 },
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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22 "methylation_protection": false
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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23 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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24 "job": {
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents: 4
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25 "command_line": "mkdir 'metoutdir_gb' && mkdir 'outdir_zip' && mkdir 'outdir_gb'&& cp '/tmp/tmpuknmm7vs/files/2/0/9/dataset_2091af2d-91c9-4b33-8247-8da805cbb225.dat' 'domestication_csv.csv' && python '/home/rkhaled/galaxytools/tools/domestication/domestication.py' --files_to_domestication '/tmp/tmpuknmm7vs/files/1/3/7/dataset_137ae005-e411-4bef-9441-3ea8d396003f.dat,/tmp/tmpuknmm7vs/files/c/9/1/dataset_c911fc98-e598-4b2e-8986-84c7187c2213.dat,/tmp/tmpuknmm7vs/files/9/8/2/dataset_982f705a-0954-4779-a110-f7dbc98a61b5.dat,/tmp/tmpuknmm7vs/files/f/8/3/dataset_f83e35aa-c450-4d4d-97cd-9c825fd04b01.dat,/tmp/tmpuknmm7vs/files/1/b/1/dataset_1b16f72f-4138-41a9-a4fc-31ef4805f7a6.dat,/tmp/tmpuknmm7vs/files/a/3/7/dataset_a37dcf91-8835-452e-9af6-868f57e3f6ee.dat,/tmp/tmpuknmm7vs/files/e/5/a/dataset_e5a85113-f134-4446-abd1-12b8399a7fd6.dat' --csv_file 'domestication_csv.csv' --file_name_mapping '/tmp/tmpuknmm7vs/files/1/3/7/dataset_137ae005-e411-4bef-9441-3ea8d396003f.dat:p3_2_CAG.gb,/tmp/tmpuknmm7vs/files/c/9/1/dataset_c911fc98-e598-4b2e-8986-84c7187c2213.dat:p7_gfp_sequence.gb,/tmp/tmpuknmm7vs/files/9/8/2/dataset_982f705a-0954-4779-a110-f7dbc98a61b5.dat:p14_CMVp.gb,/tmp/tmpuknmm7vs/files/f/8/3/dataset_f83e35aa-c450-4d4d-97cd-9c825fd04b01.dat:p16_bGHpolyA.gb,/tmp/tmpuknmm7vs/files/1/b/1/dataset_1b16f72f-4138-41a9-a4fc-31ef4805f7a6.dat:p18_CMVp.gb,/tmp/tmpuknmm7vs/files/a/3/7/dataset_a37dcf91-8835-452e-9af6-868f57e3f6ee.dat:p19_mNeoGreen.gb,/tmp/tmpuknmm7vs/files/e/5/a/dataset_e5a85113-f134-4446-abd1-12b8399a7fd6.dat:p22_PGKpolyA.gb' --use_file_names_as_id 'true' --allow_edits 'true' --output_dom 'output_zip.zip' --output_gb_dom 'outdir_gb' --output_methprot 'metoutdir_gb' --methylation_protection 'false' && cp 'output_zip.zip' '/tmp/tmpuknmm7vs/job_working_directory/000/9/outputs/dataset_ae1aa491-d08a-4d37-a82c-ec44684acd17.dat'",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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26 "command_version": "",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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27 "copied_from_job_id": null,
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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28 "create_time": "2025-05-19T14:03:28.173560",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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29 "dependencies": [],
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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30 "exit_code": 0,
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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31 "external_id": "260419",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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32 "galaxy_version": "24.2",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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33 "handler": null,
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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34 "history_id": "fc7b6f0086a57c46",
70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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35 "id": "7756d22307ab703c",
0
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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36 "inputs": {
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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37 "domestication_csv": {
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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38 "id": "22ea85fb92532e6e",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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39 "src": "hda",
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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40 "uuid": "2091af2d-91c9-4b33-8247-8da805cbb225"
0
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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41 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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42 "genbank_files1": {
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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43 "id": "fc7b6f0086a57c46",
0
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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44 "src": "hda",
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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45 "uuid": "137ae005-e411-4bef-9441-3ea8d396003f"
0
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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46 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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47 "genbank_files2": {
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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48 "id": "b5d54d71116267fb",
0
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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49 "src": "hda",
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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50 "uuid": "c911fc98-e598-4b2e-8986-84c7187c2213"
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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51 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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52 "genbank_files3": {
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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53 "id": "8e543ff561bc3697",
0
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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54 "src": "hda",
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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55 "uuid": "982f705a-0954-4779-a110-f7dbc98a61b5"
0
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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56 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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57 "genbank_files4": {
7
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58 "id": "ff69e25a80eeead0",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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59 "src": "hda",
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60 "uuid": "f83e35aa-c450-4d4d-97cd-9c825fd04b01"
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61 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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62 "genbank_files5": {
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63 "id": "dbd8a678044720b3",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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64 "src": "hda",
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65 "uuid": "1b16f72f-4138-41a9-a4fc-31ef4805f7a6"
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66 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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67 "genbank_files6": {
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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68 "id": "0723061c2449b3bc",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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69 "src": "hda",
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70 "uuid": "a37dcf91-8835-452e-9af6-868f57e3f6ee"
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71 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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72 "genbank_files7": {
7
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73 "id": "3f340e0d71960888",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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74 "src": "hda",
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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75 "uuid": "e5a85113-f134-4446-abd1-12b8399a7fd6"
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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76 }
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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77 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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78 "job_messages": [],
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79 "job_metrics": [],
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80 "job_runner_name": null,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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81 "job_stderr": "",
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82 "job_stdout": "",
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83 "model_class": "Job",
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84 "output_collections": {
f78651af72e4 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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85 "domesticated_gb": {
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86 "id": "b5d54d71116267fb",
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87 "src": "hdca"
f78651af72e4 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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88 }
f78651af72e4 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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89 },
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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90 "outputs": {
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91 "__new_primary_file_domesticated_gb|p14_CMVp__": {
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92 "id": "674b932f10cae6ec",
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93 "src": "hda",
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94 "uuid": "8428f6a9-247f-4276-9303-c15d412d77d8"
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95 },
f78651af72e4 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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96 "__new_primary_file_domesticated_gb|p16_bGHpolyA__": {
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97 "id": "0d9edf3717cf870e",
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98 "src": "hda",
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99 "uuid": "c9c4a7fd-4545-4aa0-a712-4219f7d46380"
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100 },
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101 "__new_primary_file_domesticated_gb|p18_CMVp__": {
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102 "id": "efc84d8a906cc770",
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103 "src": "hda",
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104 "uuid": "a48975ae-b76f-408a-951a-bf5c00d48e5e"
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105 },
f78651af72e4 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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106 "__new_primary_file_domesticated_gb|p19_mNeoGreen__": {
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107 "id": "3ded7ccc765d3f3a",
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108 "src": "hda",
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109 "uuid": "366823c8-d7d0-4da8-b1be-cd735e794563"
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110 },
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111 "__new_primary_file_domesticated_gb|p22_PGKpolyA__": {
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112 "id": "796ab0c34a0fb0fd",
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113 "src": "hda",
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114 "uuid": "5a67118d-1cb7-48d6-9d7a-e60a93550b59"
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115 },
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116 "__new_primary_file_domesticated_gb|p3_2_CAG__": {
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117 "id": "71039a18ff74d6c3",
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118 "src": "hda",
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119 "uuid": "1f4d81f9-3f4f-4ef8-b167-bbddb431660e"
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f78651af72e4 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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120 },
f78651af72e4 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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121 "__new_primary_file_domesticated_gb|p7_gfp_sequence__": {
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122 "id": "765a087211afd1a5",
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123 "src": "hda",
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124 "uuid": "83ac3440-dff1-46c9-8685-dedcb799639a"
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125 },
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126 "output_zip": {
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127 "id": "7756d22307ab703c",
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128 "src": "hda",
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129 "uuid": "ae1aa491-d08a-4d37-a82c-ec44684acd17"
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130 }
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131 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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132 "params": {
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133 "__input_ext": "\"input\"",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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134 "adv": "{\"allow_edits\": true, \"use_file_names_as_ids\": true}",
7
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135 "chromInfo": "\"/tmp/tmpuknmm7vs/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
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136 "dbkey": "\"?\"",
1
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137 "genbank_files": "{\"values\": [{\"id\": 1, \"src\": \"hdca\"}]}",
0
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138 "methylation_protection": "false"
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139 },
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140 "state": "ok",
7
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141 "stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.75it/s, now=None]\r \r",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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142 "stdout": "Part names were not truncated\n",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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143 "tool_id": "domestication",
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144 "tool_stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.75it/s, now=None]\r \r",
0
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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145 "tool_stdout": "Part names were not truncated\n",
7
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146 "update_time": "2025-05-19T14:03:39.118647",
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147 "user_email": "planemo@galaxyproject.org",
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148 "user_id": "fc7b6f0086a57c46"
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149 },
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150 "status": "success",
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151 "test_index": 0,
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152 "time_seconds": 33.93032908439636,
0
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153 "tool_id": "domestication",
1
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154 "tool_version": "0.1.0+galaxy1"
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155 },
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156 "has_data": true,
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157 "id": "domestication-0"
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158 },
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159 {
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160 "data": {
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161 "inputs": {
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162 "adv|allow_edits": true,
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163 "adv|use_file_names_as_ids": true,
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164 "domestication_csv": {
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165 "id": "1e850269971a1d95",
0
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166 "src": "hda"
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167 },
1
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168 "genbank_files": {
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169 "id": "8e543ff561bc3697",
1
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170 "src": "hdca"
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171 },
0
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172 "methylation_protection": true
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173 },
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174 "job": {
7
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175 "command_line": "mkdir 'metoutdir_gb' && mkdir 'outdir_zip' && mkdir 'outdir_gb'&& cp '/tmp/tmpuknmm7vs/files/2/e/7/dataset_2e74abb7-8cbb-4fb8-bbd1-e6ade579fc0e.dat' 'domestication_csv.csv' && python '/home/rkhaled/galaxytools/tools/domestication/domestication.py' --files_to_domestication '/tmp/tmpuknmm7vs/files/6/e/0/dataset_6e0e72b9-315b-4b6f-bf12-7173f9d50a6a.dat,/tmp/tmpuknmm7vs/files/3/8/e/dataset_38eb02ca-4588-496e-b2bf-c2d3f8dc4c08.dat,/tmp/tmpuknmm7vs/files/a/2/5/dataset_a25277e7-49b2-4735-893b-4bc686790d4b.dat,/tmp/tmpuknmm7vs/files/5/a/2/dataset_5a2f81c7-0187-4cde-aed1-a38f771d5774.dat,/tmp/tmpuknmm7vs/files/e/d/2/dataset_ed263438-ea3e-49eb-9ff5-63c168d74f73.dat,/tmp/tmpuknmm7vs/files/3/7/4/dataset_37446dea-30ab-4eda-9205-115e393987ef.dat,/tmp/tmpuknmm7vs/files/4/6/2/dataset_462c6f07-914c-49c8-8a95-9a2c55387b66.dat' --csv_file 'domestication_csv.csv' --file_name_mapping '/tmp/tmpuknmm7vs/files/6/e/0/dataset_6e0e72b9-315b-4b6f-bf12-7173f9d50a6a.dat:p3_2_CAG.gb,/tmp/tmpuknmm7vs/files/3/8/e/dataset_38eb02ca-4588-496e-b2bf-c2d3f8dc4c08.dat:p7_gfp_sequence.gb,/tmp/tmpuknmm7vs/files/a/2/5/dataset_a25277e7-49b2-4735-893b-4bc686790d4b.dat:p14_CMVp.gb,/tmp/tmpuknmm7vs/files/5/a/2/dataset_5a2f81c7-0187-4cde-aed1-a38f771d5774.dat:p16_bGHpolyA.gb,/tmp/tmpuknmm7vs/files/e/d/2/dataset_ed263438-ea3e-49eb-9ff5-63c168d74f73.dat:p18_CMVp.gb,/tmp/tmpuknmm7vs/files/3/7/4/dataset_37446dea-30ab-4eda-9205-115e393987ef.dat:p19_mNeoGreen.gb,/tmp/tmpuknmm7vs/files/4/6/2/dataset_462c6f07-914c-49c8-8a95-9a2c55387b66.dat:p22_PGKpolyA.gb' --use_file_names_as_id 'true' --allow_edits 'true' --output_dom 'output_zip.zip' --output_gb_dom 'outdir_gb' --output_methprot 'metoutdir_gb' --methylation_protection 'true' && cp 'output_zip.zip' '/tmp/tmpuknmm7vs/job_working_directory/000/18/outputs/dataset_bdb782f3-5124-4720-b76f-363142ea12eb.dat'",
0
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176 "command_version": "",
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177 "copied_from_job_id": null,
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178 "create_time": "2025-05-19T14:04:01.809480",
0
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179 "dependencies": [
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180 {
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181 "cacheable": false,
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182 "dependency_resolver": {
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183 "auto_init": true,
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184 "auto_install": true,
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185 "can_uninstall_dependencies": true,
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186 "ensure_channels": "conda-forge,bioconda",
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187 "model_class": "CondaDependencyResolver",
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188 "prefix": "/home/rkhaled/miniconda3",
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189 "read_only": false,
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190 "resolver_type": "conda",
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191 "resolves_simple_dependencies": true,
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192 "use_local": false,
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193 "versionless": false
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194 },
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195 "dependency_type": "conda",
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196 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ebf0296502565ba7d0f6435a4c3184b56b9905bb762f63578baf4e839a11ad14",
0
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197 "exact": true,
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198 "model_class": "MergedCondaDependency",
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199 "name": "flametree",
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200 "version": "0.1.11"
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201 },
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202 {
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203 "cacheable": false,
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204 "dependency_resolver": {
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205 "auto_init": true,
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206 "auto_install": true,
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207 "can_uninstall_dependencies": true,
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208 "ensure_channels": "conda-forge,bioconda",
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209 "model_class": "CondaDependencyResolver",
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210 "prefix": "/home/rkhaled/miniconda3",
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211 "read_only": false,
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212 "resolver_type": "conda",
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213 "resolves_simple_dependencies": true,
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214 "use_local": false,
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215 "versionless": false
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216 },
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217 "dependency_type": "conda",
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218 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ebf0296502565ba7d0f6435a4c3184b56b9905bb762f63578baf4e839a11ad14",
0
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219 "exact": true,
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220 "model_class": "MergedCondaDependency",
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221 "name": "biopython",
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222 "version": "1.85"
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223 },
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224 {
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225 "cacheable": false,
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226 "dependency_resolver": {
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227 "auto_init": true,
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228 "auto_install": true,
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229 "can_uninstall_dependencies": true,
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230 "ensure_channels": "conda-forge,bioconda",
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231 "model_class": "CondaDependencyResolver",
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232 "prefix": "/home/rkhaled/miniconda3",
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233 "read_only": false,
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234 "resolver_type": "conda",
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235 "resolves_simple_dependencies": true,
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236 "use_local": false,
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237 "versionless": false
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238 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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239 "dependency_type": "conda",
4
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240 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ebf0296502565ba7d0f6435a4c3184b56b9905bb762f63578baf4e839a11ad14",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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241 "exact": true,
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242 "model_class": "MergedCondaDependency",
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243 "name": "proglog",
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244 "version": "0.1.10"
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245 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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246 {
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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247 "cacheable": false,
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248 "dependency_resolver": {
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249 "auto_init": true,
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250 "auto_install": true,
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251 "can_uninstall_dependencies": true,
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252 "ensure_channels": "conda-forge,bioconda",
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253 "model_class": "CondaDependencyResolver",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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254 "prefix": "/home/rkhaled/miniconda3",
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255 "read_only": false,
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256 "resolver_type": "conda",
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257 "resolves_simple_dependencies": true,
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258 "use_local": false,
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259 "versionless": false
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260 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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261 "dependency_type": "conda",
4
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262 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ebf0296502565ba7d0f6435a4c3184b56b9905bb762f63578baf4e839a11ad14",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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263 "exact": true,
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264 "model_class": "MergedCondaDependency",
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265 "name": "genedom",
4
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266 "version": "0.2.2"
0
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267 },
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268 {
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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269 "cacheable": false,
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270 "dependency_resolver": {
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271 "auto_init": true,
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272 "auto_install": true,
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273 "can_uninstall_dependencies": true,
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274 "ensure_channels": "conda-forge,bioconda",
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275 "model_class": "CondaDependencyResolver",
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276 "prefix": "/home/rkhaled/miniconda3",
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277 "read_only": false,
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278 "resolver_type": "conda",
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279 "resolves_simple_dependencies": true,
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280 "use_local": false,
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281 "versionless": false
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282 },
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283 "dependency_type": "conda",
4
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284 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ebf0296502565ba7d0f6435a4c3184b56b9905bb762f63578baf4e839a11ad14",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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285 "exact": true,
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286 "model_class": "MergedCondaDependency",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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287 "name": "pandas",
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288 "version": "2.2.3"
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289 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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290 {
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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291 "cacheable": false,
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292 "dependency_resolver": {
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293 "auto_init": true,
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294 "auto_install": true,
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295 "can_uninstall_dependencies": true,
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296 "ensure_channels": "conda-forge,bioconda",
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297 "model_class": "CondaDependencyResolver",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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298 "prefix": "/home/rkhaled/miniconda3",
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299 "read_only": false,
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300 "resolver_type": "conda",
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301 "resolves_simple_dependencies": true,
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302 "use_local": false,
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303 "versionless": false
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304 },
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305 "dependency_type": "conda",
4
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306 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ebf0296502565ba7d0f6435a4c3184b56b9905bb762f63578baf4e839a11ad14",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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307 "exact": true,
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308 "model_class": "MergedCondaDependency",
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309 "name": "dnacauldron",
4
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310 "version": "2.0.12"
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311 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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312 {
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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313 "cacheable": false,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
314 "dependency_resolver": {
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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315 "auto_init": true,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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316 "auto_install": true,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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317 "can_uninstall_dependencies": true,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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318 "ensure_channels": "conda-forge,bioconda",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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319 "model_class": "CondaDependencyResolver",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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320 "prefix": "/home/rkhaled/miniconda3",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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321 "read_only": false,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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322 "resolver_type": "conda",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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323 "resolves_simple_dependencies": true,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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324 "use_local": false,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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325 "versionless": false
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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326 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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327 "dependency_type": "conda",
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328 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ebf0296502565ba7d0f6435a4c3184b56b9905bb762f63578baf4e839a11ad14",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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329 "exact": true,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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330 "model_class": "MergedCondaDependency",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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331 "name": "pdf-reports",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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332 "version": "0.3.9"
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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333 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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334 {
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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335 "cacheable": false,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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336 "dependency_resolver": {
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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337 "auto_init": true,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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338 "auto_install": true,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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339 "can_uninstall_dependencies": true,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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340 "ensure_channels": "conda-forge,bioconda",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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341 "model_class": "CondaDependencyResolver",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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342 "prefix": "/home/rkhaled/miniconda3",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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343 "read_only": false,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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344 "resolver_type": "conda",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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345 "resolves_simple_dependencies": true,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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346 "use_local": false,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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347 "versionless": false
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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348 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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349 "dependency_type": "conda",
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350 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ebf0296502565ba7d0f6435a4c3184b56b9905bb762f63578baf4e839a11ad14",
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351 "exact": true,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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352 "model_class": "MergedCondaDependency",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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353 "name": "sequenticon",
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bf8cd9487e33 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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354 "version": "0.1.8"
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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355 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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356 {
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
357 "cacheable": false,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
358 "dependency_resolver": {
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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359 "auto_init": true,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
360 "auto_install": true,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
361 "can_uninstall_dependencies": true,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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362 "ensure_channels": "conda-forge,bioconda",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
363 "model_class": "CondaDependencyResolver",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
364 "prefix": "/home/rkhaled/miniconda3",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
365 "read_only": false,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
366 "resolver_type": "conda",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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367 "resolves_simple_dependencies": true,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
368 "use_local": false,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
369 "versionless": false
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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370 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
371 "dependency_type": "conda",
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f78651af72e4 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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372 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ebf0296502565ba7d0f6435a4c3184b56b9905bb762f63578baf4e839a11ad14",
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373 "exact": true,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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374 "model_class": "MergedCondaDependency",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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375 "name": "dna_features_viewer",
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f78651af72e4 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
376 "version": "3.1.5"
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377 }
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
378 ],
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
379 "exit_code": 0,
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diff changeset
380 "external_id": "261147",
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381 "galaxy_version": "24.2",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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382 "handler": null,
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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parents: 4
diff changeset
383 "history_id": "b5d54d71116267fb",
70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
384 "id": "98ddc29ec4b65d8b",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
385 "inputs": {
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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386 "domestication_csv": {
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
387 "id": "1e850269971a1d95",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
388 "src": "hda",
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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parents: 4
diff changeset
389 "uuid": "2e74abb7-8cbb-4fb8-bbd1-e6ade579fc0e"
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
390 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
391 "genbank_files1": {
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
392 "id": "55d04483f52e4ac3",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
393 "src": "hda",
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
394 "uuid": "6e0e72b9-315b-4b6f-bf12-7173f9d50a6a"
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
395 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
396 "genbank_files2": {
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
397 "id": "98ddc29ec4b65d8b",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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diff changeset
398 "src": "hda",
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
399 "uuid": "38eb02ca-4588-496e-b2bf-c2d3f8dc4c08"
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diff changeset
400 },
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tduigou
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diff changeset
401 "genbank_files3": {
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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diff changeset
402 "id": "8d34910a63792da6",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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diff changeset
403 "src": "hda",
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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diff changeset
404 "uuid": "a25277e7-49b2-4735-893b-4bc686790d4b"
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tduigou
parents:
diff changeset
405 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
406 "genbank_files4": {
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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diff changeset
407 "id": "621625f9029b29e2",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
408 "src": "hda",
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
409 "uuid": "5a2f81c7-0187-4cde-aed1-a38f771d5774"
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tduigou
parents:
diff changeset
410 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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diff changeset
411 "genbank_files5": {
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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diff changeset
412 "id": "a0a7c91bd9b97c08",
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tduigou
parents:
diff changeset
413 "src": "hda",
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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diff changeset
414 "uuid": "ed263438-ea3e-49eb-9ff5-63c168d74f73"
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tduigou
parents:
diff changeset
415 },
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tduigou
parents:
diff changeset
416 "genbank_files6": {
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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diff changeset
417 "id": "0ee92de83756cc20",
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8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
418 "src": "hda",
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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diff changeset
419 "uuid": "37446dea-30ab-4eda-9205-115e393987ef"
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tduigou
parents:
diff changeset
420 },
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tduigou
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diff changeset
421 "genbank_files7": {
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
422 "id": "1017e10ba43f3200",
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tduigou
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diff changeset
423 "src": "hda",
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
424 "uuid": "462c6f07-914c-49c8-8a95-9a2c55387b66"
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tduigou
parents:
diff changeset
425 }
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
426 },
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tduigou
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diff changeset
427 "job_messages": [],
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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diff changeset
428 "job_metrics": [],
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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diff changeset
429 "job_runner_name": null,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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diff changeset
430 "job_stderr": "",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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diff changeset
431 "job_stdout": "",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
432 "model_class": "Job",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
433 "output_collections": {
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tduigou
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diff changeset
434 "methprot_gb": {
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tduigou
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diff changeset
435 "id": "ff69e25a80eeead0",
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tduigou
parents:
diff changeset
436 "src": "hdca"
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
437 }
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
438 },
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tduigou
parents:
diff changeset
439 "outputs": {
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tduigou
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diff changeset
440 "__new_primary_file_methprot_gb|p14_CMVp__": {
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tduigou
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diff changeset
441 "id": "4ab3dc6df9d6ead7",
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tduigou
parents:
diff changeset
442 "src": "hda",
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tduigou
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diff changeset
443 "uuid": "0d6ada79-a292-41ef-bb48-2c3a1ced45fa"
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diff changeset
444 },
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tduigou
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diff changeset
445 "__new_primary_file_methprot_gb|p16_bGHpolyA__": {
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tduigou
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diff changeset
446 "id": "d6a092eaabdcc230",
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tduigou
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diff changeset
447 "src": "hda",
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diff changeset
448 "uuid": "0977791c-edca-43cf-a704-f5da967621fa"
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parents:
diff changeset
449 },
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tduigou
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diff changeset
450 "__new_primary_file_methprot_gb|p18_CMVp__": {
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tduigou
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diff changeset
451 "id": "1d8417714248f578",
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diff changeset
452 "src": "hda",
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
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diff changeset
453 "uuid": "8ee7ab25-5689-40e0-9a2b-0714514deb05"
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tduigou
parents:
diff changeset
454 },
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diff changeset
455 "__new_primary_file_methprot_gb|p19_mNeoGreen__": {
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tduigou
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diff changeset
456 "id": "cb4ee5d51bedaa0c",
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tduigou
parents:
diff changeset
457 "src": "hda",
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tduigou
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diff changeset
458 "uuid": "ad7062ff-f20b-472d-b7e4-8d39b5139f36"
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tduigou
parents:
diff changeset
459 },
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tduigou
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diff changeset
460 "__new_primary_file_methprot_gb|p22_PGKpolyA__": {
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tduigou
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diff changeset
461 "id": "dfd900e887fa8515",
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tduigou
parents:
diff changeset
462 "src": "hda",
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diff changeset
463 "uuid": "5740b96d-15a6-482b-ac23-a7f33444d5e7"
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tduigou
parents:
diff changeset
464 },
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tduigou
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diff changeset
465 "__new_primary_file_methprot_gb|p3_2_CAG__": {
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tduigou
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diff changeset
466 "id": "5ff13a8fc7f068b0",
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tduigou
parents:
diff changeset
467 "src": "hda",
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tduigou
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diff changeset
468 "uuid": "79a94038-ff98-4840-a766-7b92e9024f6b"
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tduigou
parents:
diff changeset
469 },
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tduigou
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diff changeset
470 "__new_primary_file_methprot_gb|p7_gfp_sequence__": {
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tduigou
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diff changeset
471 "id": "ace5ddee9ee23c8b",
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tduigou
parents:
diff changeset
472 "src": "hda",
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473 "uuid": "e3f6ad6a-f19d-4edf-9eba-75ccf474d75f"
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tduigou
parents:
diff changeset
474 },
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tduigou
parents:
diff changeset
475 "output_zip": {
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tduigou
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diff changeset
476 "id": "ba419d6c663f507f",
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parents:
diff changeset
477 "src": "hda",
7
70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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478 "uuid": "bdb782f3-5124-4720-b76f-363142ea12eb"
0
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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479 }
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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480 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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diff changeset
481 "params": {
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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482 "__input_ext": "\"input\"",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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483 "adv": "{\"allow_edits\": true, \"use_file_names_as_ids\": true}",
7
70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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484 "chromInfo": "\"/tmp/tmpuknmm7vs/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
0
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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485 "dbkey": "\"?\"",
4
f78651af72e4 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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parents: 1
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486 "genbank_files": "{\"values\": [{\"id\": 3, \"src\": \"hdca\"}]}",
0
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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487 "methylation_protection": "true"
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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488 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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489 "state": "ok",
7
70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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490 "stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.74it/s, now=None]\r \r",
0
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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491 "stdout": "Part names were not truncated\n",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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492 "tool_id": "domestication",
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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493 "tool_stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.74it/s, now=None]\r \r",
0
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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494 "tool_stdout": "Part names were not truncated\n",
7
70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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495 "update_time": "2025-05-19T14:04:12.722130",
0
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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496 "user_email": "planemo@galaxyproject.org",
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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497 "user_id": "fc7b6f0086a57c46"
0
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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498 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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499 "status": "success",
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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500 "test_index": 1,
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70895bec2486 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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501 "time_seconds": 33.47424507141113,
0
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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502 "tool_id": "domestication",
1
bf8cd9487e33 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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503 "tool_version": "0.1.0+galaxy1"
0
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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504 },
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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505 "has_data": true,
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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506 "id": "domestication-1"
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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507 }
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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508 ],
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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509 "version": "0.1"
8fd9af4cb080 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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510 }