Mercurial > repos > tduigou > domestication
diff output.json @ 7:70895bec2486 draft
planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
| author | tduigou |
|---|---|
| date | Mon, 19 May 2025 14:04:56 +0000 |
| parents | f78651af72e4 |
| children | 4bfdec0be6b1 |
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--- a/output.json Mon May 19 13:41:02 2025 +0000 +++ b/output.json Mon May 19 14:04:56 2025 +0000 @@ -12,67 +12,67 @@ "adv|allow_edits": true, "adv|use_file_names_as_ids": true, "domestication_csv": { - "id": "731d411caa07a047", + "id": "22ea85fb92532e6e", "src": "hda" }, "genbank_files": { - "id": "d14be99de3d080ed", + "id": "fc7b6f0086a57c46", "src": "hdca" }, "methylation_protection": false }, "job": { - "command_line": "mkdir 'metoutdir_gb' && mkdir 'outdir_zip' && mkdir 'outdir_gb'&& python '/home/rkhaled/galaxytools/tools/domestication/domestication.py' --files_to_domestication '/tmp/tmpx7m35erq/files/f/a/a/dataset_faa3888b-c353-4955-a647-2de4e990aa04.dat,/tmp/tmpx7m35erq/files/9/9/a/dataset_99a9f317-902f-42e2-843e-bcf77f8d5e41.dat,/tmp/tmpx7m35erq/files/1/7/f/dataset_17f66eff-626e-418b-811d-23af40bcf421.dat,/tmp/tmpx7m35erq/files/3/7/a/dataset_37aee03e-9201-4898-90ed-08e269dcf307.dat,/tmp/tmpx7m35erq/files/f/9/7/dataset_f97defcc-6a78-48c0-adb8-dbc124814cc9.dat,/tmp/tmpx7m35erq/files/b/0/c/dataset_b0c757dd-f9dd-436c-8046-d848d6192506.dat,/tmp/tmpx7m35erq/files/4/0/4/dataset_40439379-7f50-4f5e-a329-f4be74549e95.dat' --csv_file '/tmp/tmpx7m35erq/files/2/9/c/dataset_29cd6651-90b3-43b3-91e3-c4cee6f32fd5.dat' --file_name_mapping '/tmp/tmpx7m35erq/files/f/a/a/dataset_faa3888b-c353-4955-a647-2de4e990aa04.dat:p3_2_CAG.gb,/tmp/tmpx7m35erq/files/9/9/a/dataset_99a9f317-902f-42e2-843e-bcf77f8d5e41.dat:p7_gfp_sequence.gb,/tmp/tmpx7m35erq/files/1/7/f/dataset_17f66eff-626e-418b-811d-23af40bcf421.dat:p14_CMVp.gb,/tmp/tmpx7m35erq/files/3/7/a/dataset_37aee03e-9201-4898-90ed-08e269dcf307.dat:p16_bGHpolyA.gb,/tmp/tmpx7m35erq/files/f/9/7/dataset_f97defcc-6a78-48c0-adb8-dbc124814cc9.dat:p18_CMVp.gb,/tmp/tmpx7m35erq/files/b/0/c/dataset_b0c757dd-f9dd-436c-8046-d848d6192506.dat:p19_mNeoGreen.gb,/tmp/tmpx7m35erq/files/4/0/4/dataset_40439379-7f50-4f5e-a329-f4be74549e95.dat:p22_PGKpolyA.gb' --use_file_names_as_id 'true' --allow_edits 'true' --output_dom 'output_zip.zip' --output_gb_dom 'outdir_gb' --output_methprot 'metoutdir_gb' --methylation_protection 'false' && cp 'output_zip.zip' '/tmp/tmpx7m35erq/job_working_directory/000/9/outputs/dataset_4808d334-4a4b-4505-88c8-5b0be07a65f2.dat'", + "command_line": "mkdir 'metoutdir_gb' && mkdir 'outdir_zip' && mkdir 'outdir_gb'&& cp '/tmp/tmpuknmm7vs/files/2/0/9/dataset_2091af2d-91c9-4b33-8247-8da805cbb225.dat' 'domestication_csv.csv' && python '/home/rkhaled/galaxytools/tools/domestication/domestication.py' --files_to_domestication '/tmp/tmpuknmm7vs/files/1/3/7/dataset_137ae005-e411-4bef-9441-3ea8d396003f.dat,/tmp/tmpuknmm7vs/files/c/9/1/dataset_c911fc98-e598-4b2e-8986-84c7187c2213.dat,/tmp/tmpuknmm7vs/files/9/8/2/dataset_982f705a-0954-4779-a110-f7dbc98a61b5.dat,/tmp/tmpuknmm7vs/files/f/8/3/dataset_f83e35aa-c450-4d4d-97cd-9c825fd04b01.dat,/tmp/tmpuknmm7vs/files/1/b/1/dataset_1b16f72f-4138-41a9-a4fc-31ef4805f7a6.dat,/tmp/tmpuknmm7vs/files/a/3/7/dataset_a37dcf91-8835-452e-9af6-868f57e3f6ee.dat,/tmp/tmpuknmm7vs/files/e/5/a/dataset_e5a85113-f134-4446-abd1-12b8399a7fd6.dat' --csv_file 'domestication_csv.csv' --file_name_mapping '/tmp/tmpuknmm7vs/files/1/3/7/dataset_137ae005-e411-4bef-9441-3ea8d396003f.dat:p3_2_CAG.gb,/tmp/tmpuknmm7vs/files/c/9/1/dataset_c911fc98-e598-4b2e-8986-84c7187c2213.dat:p7_gfp_sequence.gb,/tmp/tmpuknmm7vs/files/9/8/2/dataset_982f705a-0954-4779-a110-f7dbc98a61b5.dat:p14_CMVp.gb,/tmp/tmpuknmm7vs/files/f/8/3/dataset_f83e35aa-c450-4d4d-97cd-9c825fd04b01.dat:p16_bGHpolyA.gb,/tmp/tmpuknmm7vs/files/1/b/1/dataset_1b16f72f-4138-41a9-a4fc-31ef4805f7a6.dat:p18_CMVp.gb,/tmp/tmpuknmm7vs/files/a/3/7/dataset_a37dcf91-8835-452e-9af6-868f57e3f6ee.dat:p19_mNeoGreen.gb,/tmp/tmpuknmm7vs/files/e/5/a/dataset_e5a85113-f134-4446-abd1-12b8399a7fd6.dat:p22_PGKpolyA.gb' --use_file_names_as_id 'true' --allow_edits 'true' --output_dom 'output_zip.zip' --output_gb_dom 'outdir_gb' --output_methprot 'metoutdir_gb' --methylation_protection 'false' && cp 'output_zip.zip' '/tmp/tmpuknmm7vs/job_working_directory/000/9/outputs/dataset_ae1aa491-d08a-4d37-a82c-ec44684acd17.dat'", "command_version": "", "copied_from_job_id": null, - "create_time": "2025-05-19T12:58:14.187742", + "create_time": "2025-05-19T14:03:28.173560", "dependencies": [], "exit_code": 0, - "external_id": "213747", + "external_id": "260419", "galaxy_version": "24.2", "handler": null, - "history_id": "d14be99de3d080ed", - "id": "fee508e1bcb0faa2", + "history_id": "fc7b6f0086a57c46", + "id": "7756d22307ab703c", "inputs": { "domestication_csv": { - "id": "731d411caa07a047", + "id": "22ea85fb92532e6e", "src": "hda", - "uuid": "29cd6651-90b3-43b3-91e3-c4cee6f32fd5" + "uuid": "2091af2d-91c9-4b33-8247-8da805cbb225" }, "genbank_files1": { - "id": "d14be99de3d080ed", + "id": "fc7b6f0086a57c46", "src": "hda", - "uuid": "faa3888b-c353-4955-a647-2de4e990aa04" + "uuid": "137ae005-e411-4bef-9441-3ea8d396003f" }, "genbank_files2": { - "id": "333ca9fff0e09522", + "id": "b5d54d71116267fb", "src": "hda", - "uuid": "99a9f317-902f-42e2-843e-bcf77f8d5e41" + "uuid": "c911fc98-e598-4b2e-8986-84c7187c2213" }, "genbank_files3": { - "id": "b636088f5932061b", + "id": "8e543ff561bc3697", "src": "hda", - "uuid": "17f66eff-626e-418b-811d-23af40bcf421" + "uuid": "982f705a-0954-4779-a110-f7dbc98a61b5" }, "genbank_files4": { - "id": "95ac77ecc07de70b", + "id": "ff69e25a80eeead0", "src": "hda", - "uuid": "37aee03e-9201-4898-90ed-08e269dcf307" + "uuid": "f83e35aa-c450-4d4d-97cd-9c825fd04b01" }, "genbank_files5": { - "id": "b67ddf0d29d01e70", + "id": "dbd8a678044720b3", "src": "hda", - "uuid": "f97defcc-6a78-48c0-adb8-dbc124814cc9" + "uuid": "1b16f72f-4138-41a9-a4fc-31ef4805f7a6" }, "genbank_files6": { - "id": "667facab024bf341", + "id": "0723061c2449b3bc", "src": "hda", - "uuid": "b0c757dd-f9dd-436c-8046-d848d6192506" + "uuid": "a37dcf91-8835-452e-9af6-868f57e3f6ee" }, "genbank_files7": { - "id": "488fdb347c588432", + "id": "3f340e0d71960888", "src": "hda", - "uuid": "40439379-7f50-4f5e-a329-f4be74549e95" + "uuid": "e5a85113-f134-4446-abd1-12b8399a7fd6" } }, "job_messages": [], @@ -83,73 +83,73 @@ "model_class": "Job", "output_collections": { "domesticated_gb": { - "id": "333ca9fff0e09522", + "id": "b5d54d71116267fb", "src": "hdca" } }, "outputs": { "__new_primary_file_domesticated_gb|p14_CMVp__": { - "id": "4c892d88b39e70b4", + "id": "674b932f10cae6ec", "src": "hda", - "uuid": "a10eb5bc-c1a0-4cfc-8924-27bd94e58726" + "uuid": "8428f6a9-247f-4276-9303-c15d412d77d8" }, "__new_primary_file_domesticated_gb|p16_bGHpolyA__": { - "id": "b253aa9b6cff5f9a", + "id": "0d9edf3717cf870e", "src": "hda", - "uuid": "4897e913-0f0f-4fdf-825b-d58bd898b1c1" + "uuid": "c9c4a7fd-4545-4aa0-a712-4219f7d46380" }, "__new_primary_file_domesticated_gb|p18_CMVp__": { - "id": "2ce9c1583c06694d", + "id": "efc84d8a906cc770", "src": "hda", - "uuid": "88be19e6-4d92-4fff-8e03-392746fab26d" + "uuid": "a48975ae-b76f-408a-951a-bf5c00d48e5e" }, "__new_primary_file_domesticated_gb|p19_mNeoGreen__": { - "id": "8cf63a87c95f5d66", + "id": "3ded7ccc765d3f3a", "src": "hda", - "uuid": "3b1aef51-8f63-4fcb-af4d-869261c9a74c" + "uuid": "366823c8-d7d0-4da8-b1be-cd735e794563" }, "__new_primary_file_domesticated_gb|p22_PGKpolyA__": { - "id": "c76711703fd2ebee", + "id": "796ab0c34a0fb0fd", "src": "hda", - "uuid": "e5cefba7-b68e-4988-a7c6-24e0d4216ac4" + "uuid": "5a67118d-1cb7-48d6-9d7a-e60a93550b59" }, "__new_primary_file_domesticated_gb|p3_2_CAG__": { - "id": "7084b37a971d5f6b", + "id": "71039a18ff74d6c3", "src": "hda", - "uuid": "cfff458f-c165-403e-a848-21a5b17769f6" + "uuid": "1f4d81f9-3f4f-4ef8-b167-bbddb431660e" }, "__new_primary_file_domesticated_gb|p7_gfp_sequence__": { - "id": "bdbb8b37b6fe9de4", + "id": "765a087211afd1a5", "src": "hda", - "uuid": "58043ea5-16c9-4600-9de1-17b7e32466b3" + "uuid": "83ac3440-dff1-46c9-8685-dedcb799639a" }, "output_zip": { - "id": "fee508e1bcb0faa2", + "id": "7756d22307ab703c", "src": "hda", - "uuid": "4808d334-4a4b-4505-88c8-5b0be07a65f2" + "uuid": "ae1aa491-d08a-4d37-a82c-ec44684acd17" } }, "params": { "__input_ext": "\"input\"", "adv": "{\"allow_edits\": true, \"use_file_names_as_ids\": true}", - "chromInfo": "\"/tmp/tmpx7m35erq/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", + "chromInfo": "\"/tmp/tmpuknmm7vs/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", "dbkey": "\"?\"", "genbank_files": "{\"values\": [{\"id\": 1, \"src\": \"hdca\"}]}", "methylation_protection": "false" }, "state": "ok", - "stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.77it/s, now=None]\r \r", + "stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.75it/s, now=None]\r \r", "stdout": "Part names were not truncated\n", "tool_id": "domestication", - "tool_stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.77it/s, now=None]\r \r", + "tool_stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.75it/s, now=None]\r \r", "tool_stdout": "Part names were not truncated\n", - "update_time": "2025-05-19T12:58:25.364417", + "update_time": "2025-05-19T14:03:39.118647", "user_email": "planemo@galaxyproject.org", - "user_id": "d14be99de3d080ed" + "user_id": "fc7b6f0086a57c46" }, "status": "success", "test_index": 0, - "time_seconds": 33.631378173828125, + "time_seconds": 33.93032908439636, "tool_id": "domestication", "tool_version": "0.1.0+galaxy1" }, @@ -162,20 +162,20 @@ "adv|allow_edits": true, "adv|use_file_names_as_ids": true, "domestication_csv": { - "id": "d60a40c52e891f81", + "id": "1e850269971a1d95", "src": "hda" }, "genbank_files": { - "id": "b636088f5932061b", + "id": "8e543ff561bc3697", "src": "hdca" }, "methylation_protection": true }, "job": { - "command_line": "mkdir 'metoutdir_gb' && mkdir 'outdir_zip' && mkdir 'outdir_gb'&& python '/home/rkhaled/galaxytools/tools/domestication/domestication.py' --files_to_domestication '/tmp/tmpx7m35erq/files/6/0/f/dataset_60f65d19-207d-4b98-bd4e-e96fedce54f9.dat,/tmp/tmpx7m35erq/files/a/0/3/dataset_a0327351-822f-434b-9419-5be863a9860c.dat,/tmp/tmpx7m35erq/files/b/8/b/dataset_b8ba71c8-c407-4ef2-8d62-9e4424abb738.dat,/tmp/tmpx7m35erq/files/1/c/f/dataset_1cf7eb8e-2756-4a32-8528-feed753df170.dat,/tmp/tmpx7m35erq/files/d/9/a/dataset_d9a3d440-744f-42d7-b237-1d660611b50f.dat,/tmp/tmpx7m35erq/files/9/4/2/dataset_94214037-a224-48c0-a020-d65d129c7991.dat,/tmp/tmpx7m35erq/files/8/4/7/dataset_847ef527-7ddf-4e84-a946-7ee7a299b19e.dat' --csv_file '/tmp/tmpx7m35erq/files/3/7/8/dataset_378455ea-e8e0-4a2f-a6fc-b74871efe332.dat' --file_name_mapping '/tmp/tmpx7m35erq/files/6/0/f/dataset_60f65d19-207d-4b98-bd4e-e96fedce54f9.dat:p3_2_CAG.gb,/tmp/tmpx7m35erq/files/a/0/3/dataset_a0327351-822f-434b-9419-5be863a9860c.dat:p7_gfp_sequence.gb,/tmp/tmpx7m35erq/files/b/8/b/dataset_b8ba71c8-c407-4ef2-8d62-9e4424abb738.dat:p14_CMVp.gb,/tmp/tmpx7m35erq/files/1/c/f/dataset_1cf7eb8e-2756-4a32-8528-feed753df170.dat:p16_bGHpolyA.gb,/tmp/tmpx7m35erq/files/d/9/a/dataset_d9a3d440-744f-42d7-b237-1d660611b50f.dat:p18_CMVp.gb,/tmp/tmpx7m35erq/files/9/4/2/dataset_94214037-a224-48c0-a020-d65d129c7991.dat:p19_mNeoGreen.gb,/tmp/tmpx7m35erq/files/8/4/7/dataset_847ef527-7ddf-4e84-a946-7ee7a299b19e.dat:p22_PGKpolyA.gb' --use_file_names_as_id 'true' --allow_edits 'true' --output_dom 'output_zip.zip' --output_gb_dom 'outdir_gb' --output_methprot 'metoutdir_gb' --methylation_protection 'true' && cp 'output_zip.zip' '/tmp/tmpx7m35erq/job_working_directory/000/18/outputs/dataset_13e409d9-b579-4ded-8f9a-1587cf692ef3.dat'", + "command_line": "mkdir 'metoutdir_gb' && mkdir 'outdir_zip' && mkdir 'outdir_gb'&& cp '/tmp/tmpuknmm7vs/files/2/e/7/dataset_2e74abb7-8cbb-4fb8-bbd1-e6ade579fc0e.dat' 'domestication_csv.csv' && python '/home/rkhaled/galaxytools/tools/domestication/domestication.py' --files_to_domestication '/tmp/tmpuknmm7vs/files/6/e/0/dataset_6e0e72b9-315b-4b6f-bf12-7173f9d50a6a.dat,/tmp/tmpuknmm7vs/files/3/8/e/dataset_38eb02ca-4588-496e-b2bf-c2d3f8dc4c08.dat,/tmp/tmpuknmm7vs/files/a/2/5/dataset_a25277e7-49b2-4735-893b-4bc686790d4b.dat,/tmp/tmpuknmm7vs/files/5/a/2/dataset_5a2f81c7-0187-4cde-aed1-a38f771d5774.dat,/tmp/tmpuknmm7vs/files/e/d/2/dataset_ed263438-ea3e-49eb-9ff5-63c168d74f73.dat,/tmp/tmpuknmm7vs/files/3/7/4/dataset_37446dea-30ab-4eda-9205-115e393987ef.dat,/tmp/tmpuknmm7vs/files/4/6/2/dataset_462c6f07-914c-49c8-8a95-9a2c55387b66.dat' --csv_file 'domestication_csv.csv' --file_name_mapping '/tmp/tmpuknmm7vs/files/6/e/0/dataset_6e0e72b9-315b-4b6f-bf12-7173f9d50a6a.dat:p3_2_CAG.gb,/tmp/tmpuknmm7vs/files/3/8/e/dataset_38eb02ca-4588-496e-b2bf-c2d3f8dc4c08.dat:p7_gfp_sequence.gb,/tmp/tmpuknmm7vs/files/a/2/5/dataset_a25277e7-49b2-4735-893b-4bc686790d4b.dat:p14_CMVp.gb,/tmp/tmpuknmm7vs/files/5/a/2/dataset_5a2f81c7-0187-4cde-aed1-a38f771d5774.dat:p16_bGHpolyA.gb,/tmp/tmpuknmm7vs/files/e/d/2/dataset_ed263438-ea3e-49eb-9ff5-63c168d74f73.dat:p18_CMVp.gb,/tmp/tmpuknmm7vs/files/3/7/4/dataset_37446dea-30ab-4eda-9205-115e393987ef.dat:p19_mNeoGreen.gb,/tmp/tmpuknmm7vs/files/4/6/2/dataset_462c6f07-914c-49c8-8a95-9a2c55387b66.dat:p22_PGKpolyA.gb' --use_file_names_as_id 'true' --allow_edits 'true' --output_dom 'output_zip.zip' --output_gb_dom 'outdir_gb' --output_methprot 'metoutdir_gb' --methylation_protection 'true' && cp 'output_zip.zip' '/tmp/tmpuknmm7vs/job_working_directory/000/18/outputs/dataset_bdb782f3-5124-4720-b76f-363142ea12eb.dat'", "command_version": "", "copied_from_job_id": null, - "create_time": "2025-05-19T12:58:48.405152", + "create_time": "2025-05-19T14:04:01.809480", "dependencies": [ { "cacheable": false, @@ -377,51 +377,51 @@ } ], "exit_code": 0, - "external_id": "214552", + "external_id": "261147", "galaxy_version": "24.2", "handler": null, - "history_id": "333ca9fff0e09522", - "id": "d6319365b3f15bc0", + "history_id": "b5d54d71116267fb", + "id": "98ddc29ec4b65d8b", "inputs": { "domestication_csv": { - "id": "d60a40c52e891f81", + "id": "1e850269971a1d95", "src": "hda", - "uuid": "378455ea-e8e0-4a2f-a6fc-b74871efe332" + "uuid": "2e74abb7-8cbb-4fb8-bbd1-e6ade579fc0e" }, "genbank_files1": { - "id": "a5542bcb255f1fe3", + "id": "55d04483f52e4ac3", "src": "hda", - "uuid": "60f65d19-207d-4b98-bd4e-e96fedce54f9" + "uuid": "6e0e72b9-315b-4b6f-bf12-7173f9d50a6a" }, "genbank_files2": { - "id": "d6319365b3f15bc0", + "id": "98ddc29ec4b65d8b", "src": "hda", - "uuid": "a0327351-822f-434b-9419-5be863a9860c" + "uuid": "38eb02ca-4588-496e-b2bf-c2d3f8dc4c08" }, "genbank_files3": { - "id": "e8bbe2c6fd185fe3", + "id": "8d34910a63792da6", "src": "hda", - "uuid": "b8ba71c8-c407-4ef2-8d62-9e4424abb738" + "uuid": "a25277e7-49b2-4735-893b-4bc686790d4b" }, "genbank_files4": { - "id": "898df5142a61135b", + "id": "621625f9029b29e2", "src": "hda", - "uuid": "1cf7eb8e-2756-4a32-8528-feed753df170" + "uuid": "5a2f81c7-0187-4cde-aed1-a38f771d5774" }, "genbank_files5": { - "id": "e17cef8ccd4f9c47", + "id": "a0a7c91bd9b97c08", "src": "hda", - "uuid": "d9a3d440-744f-42d7-b237-1d660611b50f" + "uuid": "ed263438-ea3e-49eb-9ff5-63c168d74f73" }, "genbank_files6": { - "id": "8d21e5a48c50c737", + "id": "0ee92de83756cc20", "src": "hda", - "uuid": "94214037-a224-48c0-a020-d65d129c7991" + "uuid": "37446dea-30ab-4eda-9205-115e393987ef" }, "genbank_files7": { - "id": "90d918ed95474b27", + "id": "1017e10ba43f3200", "src": "hda", - "uuid": "847ef527-7ddf-4e84-a946-7ee7a299b19e" + "uuid": "462c6f07-914c-49c8-8a95-9a2c55387b66" } }, "job_messages": [], @@ -432,73 +432,73 @@ "model_class": "Job", "output_collections": { "methprot_gb": { - "id": "95ac77ecc07de70b", + "id": "ff69e25a80eeead0", "src": "hdca" } }, "outputs": { "__new_primary_file_methprot_gb|p14_CMVp__": { - "id": "489ec5bc1516ecd5", + "id": "4ab3dc6df9d6ead7", "src": "hda", - "uuid": "0d2af719-3628-40af-a6c1-a5e90137381f" + "uuid": "0d6ada79-a292-41ef-bb48-2c3a1ced45fa" }, "__new_primary_file_methprot_gb|p16_bGHpolyA__": { - "id": "99e717225525c9eb", + "id": "d6a092eaabdcc230", "src": "hda", - "uuid": "33425e71-0bff-46f4-8c23-e744a45602ca" + "uuid": "0977791c-edca-43cf-a704-f5da967621fa" }, "__new_primary_file_methprot_gb|p18_CMVp__": { - "id": "656b6ec7223fbf1e", + "id": "1d8417714248f578", "src": "hda", - "uuid": "48cda26f-cfea-44f6-9e8b-50eff2717750" + "uuid": "8ee7ab25-5689-40e0-9a2b-0714514deb05" }, "__new_primary_file_methprot_gb|p19_mNeoGreen__": { - "id": "113c9cc0c15058bb", + "id": "cb4ee5d51bedaa0c", "src": "hda", - "uuid": "bab0b5c7-fc74-4ad4-b663-705a673522bb" + "uuid": "ad7062ff-f20b-472d-b7e4-8d39b5139f36" }, "__new_primary_file_methprot_gb|p22_PGKpolyA__": { - "id": "0c6048baa6a25748", + "id": "dfd900e887fa8515", "src": "hda", - "uuid": "ee56e78a-0a85-47c9-a059-0a61413e55ed" + "uuid": "5740b96d-15a6-482b-ac23-a7f33444d5e7" }, "__new_primary_file_methprot_gb|p3_2_CAG__": { - "id": "05295ab3ba4727fb", + "id": "5ff13a8fc7f068b0", "src": "hda", - "uuid": "3c5e8804-dfd5-4294-8122-6bcbc027f815" + "uuid": "79a94038-ff98-4840-a766-7b92e9024f6b" }, "__new_primary_file_methprot_gb|p7_gfp_sequence__": { - "id": "ae0a3b89507f75f1", + "id": "ace5ddee9ee23c8b", "src": "hda", - "uuid": "ab9d3d90-d1f0-48ed-b8de-988762521355" + "uuid": "e3f6ad6a-f19d-4edf-9eba-75ccf474d75f" }, "output_zip": { - "id": "891630a60c9b70b3", + "id": "ba419d6c663f507f", "src": "hda", - "uuid": "13e409d9-b579-4ded-8f9a-1587cf692ef3" + "uuid": "bdb782f3-5124-4720-b76f-363142ea12eb" } }, "params": { "__input_ext": "\"input\"", "adv": "{\"allow_edits\": true, \"use_file_names_as_ids\": true}", - "chromInfo": "\"/tmp/tmpx7m35erq/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", + "chromInfo": "\"/tmp/tmpuknmm7vs/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", "dbkey": "\"?\"", "genbank_files": "{\"values\": [{\"id\": 3, \"src\": \"hdca\"}]}", "methylation_protection": "true" }, "state": "ok", - "stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.76it/s, now=None]\r \r", + "stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.74it/s, now=None]\r \r", "stdout": "Part names were not truncated\n", "tool_id": "domestication", - "tool_stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.76it/s, now=None]\r \r", + "tool_stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.74it/s, now=None]\r \r", "tool_stdout": "Part names were not truncated\n", - "update_time": "2025-05-19T12:58:58.703537", + "update_time": "2025-05-19T14:04:12.722130", "user_email": "planemo@galaxyproject.org", - "user_id": "d14be99de3d080ed" + "user_id": "fc7b6f0086a57c46" }, "status": "success", "test_index": 1, - "time_seconds": 33.25414228439331, + "time_seconds": 33.47424507141113, "tool_id": "domestication", "tool_version": "0.1.0+galaxy1" },