Mercurial > repos > tduigou > domestication
diff output.json @ 1:bf8cd9487e33 draft
planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
| author | tduigou |
|---|---|
| date | Tue, 13 May 2025 07:22:36 +0000 |
| parents | 8fd9af4cb080 |
| children | f78651af72e4 |
line wrap: on
line diff
--- a/output.json Mon May 12 10:21:24 2025 +0000 +++ b/output.json Tue May 13 07:22:36 2025 +0000 @@ -12,98 +12,67 @@ "adv|allow_edits": true, "adv|use_file_names_as_ids": true, "domestication_csv": { - "id": "aaa883914c50d913", + "id": "6c832fb8ac42860f", "src": "hda" }, - "genbank_files": [ - { - "id": "f16125b2a7e364b6", - "src": "hda" - }, - { - "id": "723c01d174904c31", - "src": "hda" - }, - { - "id": "6f9854c84e6fb32c", - "src": "hda" - }, - { - "id": "ac6038717ee9c106", - "src": "hda" - }, - { - "id": "1b3b4b31ea959cca", - "src": "hda" - }, - { - "id": "7144c3d02f40c0d6", - "src": "hda" - }, - { - "id": "9d14f67ce73d06b8", - "src": "hda" - } - ], + "genbank_files": { + "id": "e660c01bdba47572", + "src": "hdca" + }, "methylation_protection": false }, "job": { - "command_line": "mkdir 'outdir_gb' && mkdir 'outdir_zip' && python '/home/rkhaled/galaxytools/tools/domestication/domestication.py' --files_to_domestication '/tmp/tmpbjg5_060/files/1/7/7/dataset_1773336e-37c8-467a-932e-47c5d4bc7247.dat,/tmp/tmpbjg5_060/files/e/e/4/dataset_ee4defe5-2762-48fb-b10b-350bfbb4b71d.dat,/tmp/tmpbjg5_060/files/4/0/4/dataset_4041b0a0-86b9-4a81-9e95-77031b1fb96f.dat,/tmp/tmpbjg5_060/files/f/a/8/dataset_fa8e14e1-6c87-4a13-801f-ecb72b5e9517.dat,/tmp/tmpbjg5_060/files/0/7/b/dataset_07b8841b-22ef-4142-8931-7ae4111f1887.dat,/tmp/tmpbjg5_060/files/a/6/5/dataset_a653f705-9192-485d-94f3-22b66714c9fb.dat,/tmp/tmpbjg5_060/files/1/e/a/dataset_1ea79cfa-b478-4c9b-b906-9b08526c85f4.dat' --csv_file '/tmp/tmpbjg5_060/files/8/d/0/dataset_8d08fc90-ab45-4d65-8912-1edef99b50e5.dat' --file_name_mapping '/tmp/tmpbjg5_060/files/1/7/7/dataset_1773336e-37c8-467a-932e-47c5d4bc7247.dat:p3_2_CAG.gb,/tmp/tmpbjg5_060/files/e/e/4/dataset_ee4defe5-2762-48fb-b10b-350bfbb4b71d.dat:p7_gfp_sequence.gb,/tmp/tmpbjg5_060/files/4/0/4/dataset_4041b0a0-86b9-4a81-9e95-77031b1fb96f.dat:p14_CMVp.gb,/tmp/tmpbjg5_060/files/f/a/8/dataset_fa8e14e1-6c87-4a13-801f-ecb72b5e9517.dat:p16_bGHpolyA.gb,/tmp/tmpbjg5_060/files/0/7/b/dataset_07b8841b-22ef-4142-8931-7ae4111f1887.dat:p18_CMVp.gb,/tmp/tmpbjg5_060/files/a/6/5/dataset_a653f705-9192-485d-94f3-22b66714c9fb.dat:p19_mNeoGreen.gb,/tmp/tmpbjg5_060/files/1/e/a/dataset_1ea79cfa-b478-4c9b-b906-9b08526c85f4.dat:p22_PGKpolyA.gb' --use_file_names_as_id 'true' --allow_edits 'true' --output_dom 'output_zip.zip' --output_methprot 'outdir_gb' --methylation_protection 'false' && cp 'output_zip.zip' '/tmp/tmpbjg5_060/job_working_directory/000/9/outputs/dataset_3bd2c885-c568-4c63-8f50-4d3f470c77a5.dat'", + "command_line": "mkdir 'outdir_gb' && mkdir 'outdir_zip' && python '/home/rkhaled/galaxytools/tools/domestication/domestication.py' --files_to_domestication '/tmp/tmpmomj1390/files/9/8/e/dataset_98eaff26-0334-4311-b121-579c564457fa.dat,/tmp/tmpmomj1390/files/6/9/e/dataset_69e06834-aff3-45c0-8c8a-1b0951b3c58a.dat,/tmp/tmpmomj1390/files/a/4/3/dataset_a43d91b4-75bc-42ad-b3eb-3c2b8974849d.dat,/tmp/tmpmomj1390/files/b/8/4/dataset_b8425ed5-d152-443a-ab5e-d5e5d8e18685.dat,/tmp/tmpmomj1390/files/a/f/5/dataset_af5ff6ae-e7f3-4d04-9e27-2f4619b9a7f5.dat,/tmp/tmpmomj1390/files/d/f/b/dataset_dfbae617-1607-410e-ae63-95e367876898.dat,/tmp/tmpmomj1390/files/9/9/d/dataset_99d37e87-dd8a-4439-a03a-004433442d3f.dat' --csv_file '/tmp/tmpmomj1390/files/f/b/c/dataset_fbc30e96-b97e-4267-8ed5-5ceaa219759e.dat' --file_name_mapping '/tmp/tmpmomj1390/files/9/8/e/dataset_98eaff26-0334-4311-b121-579c564457fa.dat:p3_2_CAG.gb,/tmp/tmpmomj1390/files/6/9/e/dataset_69e06834-aff3-45c0-8c8a-1b0951b3c58a.dat:p7_gfp_sequence.gb,/tmp/tmpmomj1390/files/a/4/3/dataset_a43d91b4-75bc-42ad-b3eb-3c2b8974849d.dat:p14_CMVp.gb,/tmp/tmpmomj1390/files/b/8/4/dataset_b8425ed5-d152-443a-ab5e-d5e5d8e18685.dat:p16_bGHpolyA.gb,/tmp/tmpmomj1390/files/a/f/5/dataset_af5ff6ae-e7f3-4d04-9e27-2f4619b9a7f5.dat:p18_CMVp.gb,/tmp/tmpmomj1390/files/d/f/b/dataset_dfbae617-1607-410e-ae63-95e367876898.dat:p19_mNeoGreen.gb,/tmp/tmpmomj1390/files/9/9/d/dataset_99d37e87-dd8a-4439-a03a-004433442d3f.dat:p22_PGKpolyA.gb' --use_file_names_as_id 'true' --allow_edits 'true' --output_dom 'output_zip.zip' --output_methprot 'outdir_gb' --methylation_protection 'false' && cp 'output_zip.zip' '/tmp/tmpmomj1390/job_working_directory/000/9/outputs/dataset_6e663eda-900f-4c38-aa98-8ed6be291879.dat'", "command_version": "", "copied_from_job_id": null, - "create_time": "2025-05-12T10:19:22.845477", + "create_time": "2025-05-12T15:19:23.808194", "dependencies": [], "exit_code": 0, - "external_id": "151742", + "external_id": "300911", "galaxy_version": "24.2", "handler": null, - "history_id": "f16125b2a7e364b6", - "id": "711290ccc3448dbe", + "history_id": "e660c01bdba47572", + "id": "86d58b95f07edb2d", "inputs": { "domestication_csv": { - "id": "aaa883914c50d913", + "id": "6c832fb8ac42860f", "src": "hda", - "uuid": "8d08fc90-ab45-4d65-8912-1edef99b50e5" - }, - "genbank_files": { - "id": "f16125b2a7e364b6", - "src": "hda", - "uuid": "1773336e-37c8-467a-932e-47c5d4bc7247" + "uuid": "fbc30e96-b97e-4267-8ed5-5ceaa219759e" }, "genbank_files1": { - "id": "f16125b2a7e364b6", + "id": "e660c01bdba47572", "src": "hda", - "uuid": "1773336e-37c8-467a-932e-47c5d4bc7247" + "uuid": "98eaff26-0334-4311-b121-579c564457fa" }, "genbank_files2": { - "id": "723c01d174904c31", + "id": "94d973d69c111d7f", "src": "hda", - "uuid": "ee4defe5-2762-48fb-b10b-350bfbb4b71d" + "uuid": "69e06834-aff3-45c0-8c8a-1b0951b3c58a" }, "genbank_files3": { - "id": "6f9854c84e6fb32c", + "id": "6da151567610da58", "src": "hda", - "uuid": "4041b0a0-86b9-4a81-9e95-77031b1fb96f" + "uuid": "a43d91b4-75bc-42ad-b3eb-3c2b8974849d" }, "genbank_files4": { - "id": "ac6038717ee9c106", + "id": "2cbbdad9a9ee38a7", "src": "hda", - "uuid": "fa8e14e1-6c87-4a13-801f-ecb72b5e9517" + "uuid": "b8425ed5-d152-443a-ab5e-d5e5d8e18685" }, "genbank_files5": { - "id": "1b3b4b31ea959cca", + "id": "8cbbf46d79fe2594", "src": "hda", - "uuid": "07b8841b-22ef-4142-8931-7ae4111f1887" + "uuid": "af5ff6ae-e7f3-4d04-9e27-2f4619b9a7f5" }, "genbank_files6": { - "id": "7144c3d02f40c0d6", + "id": "8e76e08000cb23f6", "src": "hda", - "uuid": "a653f705-9192-485d-94f3-22b66714c9fb" + "uuid": "dfbae617-1607-410e-ae63-95e367876898" }, "genbank_files7": { - "id": "9d14f67ce73d06b8", + "id": "c5a9d28d6cf64e0c", "src": "hda", - "uuid": "1ea79cfa-b478-4c9b-b906-9b08526c85f4" + "uuid": "99d37e87-dd8a-4439-a03a-004433442d3f" } }, "job_messages": [], @@ -115,33 +84,34 @@ "output_collections": {}, "outputs": { "output_zip": { - "id": "711290ccc3448dbe", + "id": "86d58b95f07edb2d", "src": "hda", - "uuid": "3bd2c885-c568-4c63-8f50-4d3f470c77a5" + "uuid": "6e663eda-900f-4c38-aa98-8ed6be291879" } }, "params": { "__input_ext": "\"input\"", "adv": "{\"allow_edits\": true, \"use_file_names_as_ids\": true}", - "chromInfo": "\"/tmp/tmpbjg5_060/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", + "chromInfo": "\"/tmp/tmpmomj1390/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", "dbkey": "\"?\"", + "genbank_files": "{\"values\": [{\"id\": 1, \"src\": \"hdca\"}]}", "methylation_protection": "false" }, "state": "ok", - "stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.57it/s, now=None]\r \r", + "stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.73it/s, now=None]\r \r", "stdout": "Part names were not truncated\n", "tool_id": "domestication", - "tool_stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.57it/s, now=None]\r \r", + "tool_stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.73it/s, now=None]\r \r", "tool_stdout": "Part names were not truncated\n", - "update_time": "2025-05-12T10:19:34.231647", + "update_time": "2025-05-12T15:19:35.066496", "user_email": "planemo@galaxyproject.org", - "user_id": "f16125b2a7e364b6" + "user_id": "e660c01bdba47572" }, "status": "success", "test_index": 0, - "time_seconds": 34.99027061462402, + "time_seconds": 33.88110899925232, "tool_id": "domestication", - "tool_version": "0.1.0+galaxy0" + "tool_version": "0.1.0+galaxy1" }, "has_data": true, "id": "domestication-0" @@ -152,46 +122,20 @@ "adv|allow_edits": true, "adv|use_file_names_as_ids": true, "domestication_csv": { - "id": "0712ecd128ea57d7", + "id": "ff21cf4b5818da45", "src": "hda" }, - "genbank_files": [ - { - "id": "4e411fc6241b00c0", - "src": "hda" - }, - { - "id": "53c1d5da63e22734", - "src": "hda" - }, - { - "id": "918757d2d9059ecb", - "src": "hda" - }, - { - "id": "3d0b1ede0f9f407d", - "src": "hda" - }, - { - "id": "d67f207c70f90bba", - "src": "hda" - }, - { - "id": "5c88b35f288963f6", - "src": "hda" - }, - { - "id": "3e3b5a8a813595d7", - "src": "hda" - } - ], + "genbank_files": { + "id": "94d973d69c111d7f", + "src": "hdca" + }, "methylation_protection": true }, "job": { - "command_line": "mkdir 'outdir_gb' && mkdir 'outdir_zip' && python '/home/rkhaled/galaxytools/tools/domestication/domestication.py' --files_to_domestication '/tmp/tmpbjg5_060/files/b/f/f/dataset_bff36fb4-2ddc-497c-a812-b821fcafcaf6.dat,/tmp/tmpbjg5_060/files/c/9/4/dataset_c94619a2-c571-4719-8d77-fe8e5566092f.dat,/tmp/tmpbjg5_060/files/a/8/e/dataset_a8edcb78-9ec5-45f1-b05f-17b619e372a7.dat,/tmp/tmpbjg5_060/files/b/c/6/dataset_bc62ddd0-de10-42c4-9aa4-c62010af835d.dat,/tmp/tmpbjg5_060/files/5/5/a/dataset_55aa74b8-36ca-474d-ac73-bda39d9e5e01.dat,/tmp/tmpbjg5_060/files/7/0/9/dataset_7098d987-4200-4111-9508-bbe109fec271.dat,/tmp/tmpbjg5_060/files/7/8/1/dataset_781da4ba-2cb5-4cc3-aebb-e066475dfaef.dat' --csv_file '/tmp/tmpbjg5_060/files/6/2/b/dataset_62b232e6-6915-467a-9e55-febd6b17d9d7.dat' --file_name_mapping '/tmp/tmpbjg5_060/files/b/f/f/dataset_bff36fb4-2ddc-497c-a812-b821fcafcaf6.dat:p3_2_CAG.gb,/tmp/tmpbjg5_060/files/c/9/4/dataset_c94619a2-c571-4719-8d77-fe8e5566092f.dat:p7_gfp_sequence.gb,/tmp/tmpbjg5_060/files/a/8/e/dataset_a8edcb78-9ec5-45f1-b05f-17b619e372a7.dat:p14_CMVp.gb,/tmp/tmpbjg5_060/files/b/c/6/dataset_bc62ddd0-de10-42c4-9aa4-c62010af835d.dat:p16_bGHpolyA.gb,/tmp/tmpbjg5_060/files/5/5/a/dataset_55aa74b8-36ca-474d-ac73-bda39d9e5e01.dat:p18_CMVp.gb,/tmp/tmpbjg5_060/files/7/0/9/dataset_7098d987-4200-4111-9508-bbe109fec271.dat:p19_mNeoGreen.gb,/tmp/tmpbjg5_060/files/7/8/1/dataset_781da4ba-2cb5-4cc3-aebb-e066475dfaef.dat:p22_PGKpolyA.gb' --use_file_names_as_id 'true' --allow_edits 'true' --output_dom 'output_zip.zip' --output_methprot 'outdir_gb' --methylation_protection 'true' && cp 'output_zip.zip' '/tmp/tmpbjg5_060/job_working_directory/000/18/outputs/dataset_8986a1c0-102c-469b-b20d-012bfab02e3a.dat'", + "command_line": "mkdir 'outdir_gb' && mkdir 'outdir_zip' && python '/home/rkhaled/galaxytools/tools/domestication/domestication.py' --files_to_domestication '/tmp/tmpmomj1390/files/b/1/3/dataset_b13b6d1b-090f-499c-b64b-c1630dcc675b.dat,/tmp/tmpmomj1390/files/c/5/0/dataset_c5065ec8-dc8a-4bd5-ad78-8b6925b1e13a.dat,/tmp/tmpmomj1390/files/5/c/6/dataset_5c6a4082-6f02-474d-be70-1263d3220dcb.dat,/tmp/tmpmomj1390/files/a/b/1/dataset_ab14cebb-85b9-4fff-9cb1-1056c9701e21.dat,/tmp/tmpmomj1390/files/6/f/e/dataset_6fe23d92-e2c0-4888-b627-d413e61b1d61.dat,/tmp/tmpmomj1390/files/e/9/9/dataset_e990dda1-9ebf-4414-a79c-9cf220f81ca3.dat,/tmp/tmpmomj1390/files/b/4/0/dataset_b40f7a77-27cd-4422-b821-eecc5774e6e6.dat' --csv_file '/tmp/tmpmomj1390/files/0/b/1/dataset_0b1c2aef-600f-4d98-afa3-a2243e337da1.dat' --file_name_mapping '/tmp/tmpmomj1390/files/b/1/3/dataset_b13b6d1b-090f-499c-b64b-c1630dcc675b.dat:p3_2_CAG.gb,/tmp/tmpmomj1390/files/c/5/0/dataset_c5065ec8-dc8a-4bd5-ad78-8b6925b1e13a.dat:p7_gfp_sequence.gb,/tmp/tmpmomj1390/files/5/c/6/dataset_5c6a4082-6f02-474d-be70-1263d3220dcb.dat:p14_CMVp.gb,/tmp/tmpmomj1390/files/a/b/1/dataset_ab14cebb-85b9-4fff-9cb1-1056c9701e21.dat:p16_bGHpolyA.gb,/tmp/tmpmomj1390/files/6/f/e/dataset_6fe23d92-e2c0-4888-b627-d413e61b1d61.dat:p18_CMVp.gb,/tmp/tmpmomj1390/files/e/9/9/dataset_e990dda1-9ebf-4414-a79c-9cf220f81ca3.dat:p19_mNeoGreen.gb,/tmp/tmpmomj1390/files/b/4/0/dataset_b40f7a77-27cd-4422-b821-eecc5774e6e6.dat:p22_PGKpolyA.gb' --use_file_names_as_id 'true' --allow_edits 'true' --output_dom 'output_zip.zip' --output_methprot 'outdir_gb' --methylation_protection 'true' && cp 'output_zip.zip' '/tmp/tmpmomj1390/job_working_directory/000/18/outputs/dataset_e5fbb54d-ef6f-4bd9-9a45-a16d722f41f1.dat'", "command_version": "", "copied_from_job_id": null, - "create_time": "2025-05-12T10:19:57.856904", + "create_time": "2025-05-12T15:19:57.567258", "dependencies": [ { "cacheable": false, @@ -209,7 +153,7 @@ "versionless": false }, "dependency_type": "conda", - "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-bdd4a85f8bf182a44b33909cd353bfe9976ca4f7cd7e03cfde43ddec0191410c", + "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-f05e814ead139eea2d366bbe58573083f8fc211e23465a99188722aaf9b8befd", "exact": true, "model_class": "MergedCondaDependency", "name": "flametree", @@ -231,7 +175,7 @@ "versionless": false }, "dependency_type": "conda", - "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-bdd4a85f8bf182a44b33909cd353bfe9976ca4f7cd7e03cfde43ddec0191410c", + "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-f05e814ead139eea2d366bbe58573083f8fc211e23465a99188722aaf9b8befd", "exact": true, "model_class": "MergedCondaDependency", "name": "biopython", @@ -253,7 +197,7 @@ "versionless": false }, "dependency_type": "conda", - "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-bdd4a85f8bf182a44b33909cd353bfe9976ca4f7cd7e03cfde43ddec0191410c", + "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-f05e814ead139eea2d366bbe58573083f8fc211e23465a99188722aaf9b8befd", "exact": true, "model_class": "MergedCondaDependency", "name": "proglog", @@ -275,7 +219,7 @@ "versionless": false }, "dependency_type": "conda", - "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-bdd4a85f8bf182a44b33909cd353bfe9976ca4f7cd7e03cfde43ddec0191410c", + "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-f05e814ead139eea2d366bbe58573083f8fc211e23465a99188722aaf9b8befd", "exact": true, "model_class": "MergedCondaDependency", "name": "genedom", @@ -297,7 +241,7 @@ "versionless": false }, "dependency_type": "conda", - "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-bdd4a85f8bf182a44b33909cd353bfe9976ca4f7cd7e03cfde43ddec0191410c", + "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-f05e814ead139eea2d366bbe58573083f8fc211e23465a99188722aaf9b8befd", "exact": true, "model_class": "MergedCondaDependency", "name": "pandas", @@ -319,7 +263,7 @@ "versionless": false }, "dependency_type": "conda", - "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-bdd4a85f8bf182a44b33909cd353bfe9976ca4f7cd7e03cfde43ddec0191410c", + "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-f05e814ead139eea2d366bbe58573083f8fc211e23465a99188722aaf9b8befd", "exact": true, "model_class": "MergedCondaDependency", "name": "dnacauldron", @@ -341,7 +285,7 @@ "versionless": false }, "dependency_type": "conda", - "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-bdd4a85f8bf182a44b33909cd353bfe9976ca4f7cd7e03cfde43ddec0191410c", + "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-f05e814ead139eea2d366bbe58573083f8fc211e23465a99188722aaf9b8befd", "exact": true, "model_class": "MergedCondaDependency", "name": "pdf-reports", @@ -363,11 +307,11 @@ "versionless": false }, "dependency_type": "conda", - "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-bdd4a85f8bf182a44b33909cd353bfe9976ca4f7cd7e03cfde43ddec0191410c", + "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-f05e814ead139eea2d366bbe58573083f8fc211e23465a99188722aaf9b8befd", "exact": true, "model_class": "MergedCondaDependency", "name": "sequenticon", - "version": "0.1.7" + "version": "0.1.8" }, { "cacheable": false, @@ -385,7 +329,7 @@ "versionless": false }, "dependency_type": "conda", - "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-bdd4a85f8bf182a44b33909cd353bfe9976ca4f7cd7e03cfde43ddec0191410c", + "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-f05e814ead139eea2d366bbe58573083f8fc211e23465a99188722aaf9b8befd", "exact": true, "model_class": "MergedCondaDependency", "name": "dna_features_viewer", @@ -393,56 +337,51 @@ } ], "exit_code": 0, - "external_id": "152624", + "external_id": "301662", "galaxy_version": "24.2", "handler": null, - "history_id": "723c01d174904c31", - "id": "297141c205679f60", + "history_id": "94d973d69c111d7f", + "id": "3a6ea217cbbcfeb3", "inputs": { "domestication_csv": { - "id": "0712ecd128ea57d7", + "id": "ff21cf4b5818da45", "src": "hda", - "uuid": "62b232e6-6915-467a-9e55-febd6b17d9d7" - }, - "genbank_files": { - "id": "4e411fc6241b00c0", - "src": "hda", - "uuid": "bff36fb4-2ddc-497c-a812-b821fcafcaf6" + "uuid": "0b1c2aef-600f-4d98-afa3-a2243e337da1" }, "genbank_files1": { - "id": "4e411fc6241b00c0", + "id": "58b9ec2cc51a7bbc", "src": "hda", - "uuid": "bff36fb4-2ddc-497c-a812-b821fcafcaf6" + "uuid": "b13b6d1b-090f-499c-b64b-c1630dcc675b" }, "genbank_files2": { - "id": "53c1d5da63e22734", + "id": "dfd200964bc0e0b3", "src": "hda", - "uuid": "c94619a2-c571-4719-8d77-fe8e5566092f" + "uuid": "c5065ec8-dc8a-4bd5-ad78-8b6925b1e13a" }, "genbank_files3": { - "id": "918757d2d9059ecb", + "id": "728ee4548f790253", "src": "hda", - "uuid": "a8edcb78-9ec5-45f1-b05f-17b619e372a7" + "uuid": "5c6a4082-6f02-474d-be70-1263d3220dcb" }, "genbank_files4": { - "id": "3d0b1ede0f9f407d", + "id": "8ec4d60703928c0b", "src": "hda", - "uuid": "bc62ddd0-de10-42c4-9aa4-c62010af835d" + "uuid": "ab14cebb-85b9-4fff-9cb1-1056c9701e21" }, "genbank_files5": { - "id": "d67f207c70f90bba", + "id": "0ea49e46b3b36fc8", "src": "hda", - "uuid": "55aa74b8-36ca-474d-ac73-bda39d9e5e01" + "uuid": "6fe23d92-e2c0-4888-b627-d413e61b1d61" }, "genbank_files6": { - "id": "5c88b35f288963f6", + "id": "fa15c2af129b8b76", "src": "hda", - "uuid": "7098d987-4200-4111-9508-bbe109fec271" + "uuid": "e990dda1-9ebf-4414-a79c-9cf220f81ca3" }, "genbank_files7": { - "id": "3e3b5a8a813595d7", + "id": "e23a32c230113bee", "src": "hda", - "uuid": "781da4ba-2cb5-4cc3-aebb-e066475dfaef" + "uuid": "b40f7a77-27cd-4422-b821-eecc5774e6e6" } }, "job_messages": [], @@ -453,74 +392,75 @@ "model_class": "Job", "output_collections": { "methprot_gb": { - "id": "f16125b2a7e364b6", + "id": "6da151567610da58", "src": "hdca" } }, "outputs": { "__new_primary_file_methprot_gb|p14_CMVp__": { - "id": "85982e889452a524", + "id": "ff56119d03b36f7e", "src": "hda", - "uuid": "4a810eb2-bc3c-4905-8f07-90f63a0b221f" + "uuid": "4ce1c883-a9a0-4d2f-893d-1367d70461a9" }, "__new_primary_file_methprot_gb|p16_bGHpolyA__": { - "id": "df7e9e960b92dcd6", + "id": "23c852ea5c29414c", "src": "hda", - "uuid": "7e5476ac-38cd-4a82-98ad-0fc2222e49df" + "uuid": "1db47dfa-c46a-47cd-bd6e-cb373414291a" }, "__new_primary_file_methprot_gb|p18_CMVp__": { - "id": "ff4a37beb4d084ef", + "id": "2a13f3a02c150685", "src": "hda", - "uuid": "c8b8371f-c832-4287-8493-a58191a6dafc" + "uuid": "974bb633-efcf-4a64-8b65-ccd2e02c7fc7" }, "__new_primary_file_methprot_gb|p19_mNeoGreen__": { - "id": "72bf0a10e7ee2b0b", + "id": "0d219ad454277643", "src": "hda", - "uuid": "cb0cb9ab-3856-4998-80d8-c790704d0ea6" + "uuid": "bc97a0eb-f620-4e9c-8d54-f538c86a1a84" }, "__new_primary_file_methprot_gb|p22_PGKpolyA__": { - "id": "24c3dd01ebb16d97", + "id": "8ba22fe1db24a1dd", "src": "hda", - "uuid": "08cbae4f-3b7c-4443-b181-b53764c22971" + "uuid": "f2082e29-29a9-44b5-8090-88d82b96fab7" }, "__new_primary_file_methprot_gb|p3_2_CAG__": { - "id": "93cd9bd35f8d4a08", + "id": "eeb9f7bb54b54cc1", "src": "hda", - "uuid": "d2ff7a41-e0f9-4bea-bc4c-cc7ff6f22836" + "uuid": "996aeeed-114f-4e88-a3e8-ac6ca810bd5a" }, "__new_primary_file_methprot_gb|p7_gfp_sequence__": { - "id": "78c1a7160169fd44", + "id": "a067f4d569f90edf", "src": "hda", - "uuid": "6c4d9b0d-486a-4c36-9670-e2266d5a9622" + "uuid": "938ac53e-c913-4c4e-99b5-0ed92e4114d4" }, "output_zip": { - "id": "297141c205679f60", + "id": "3a6ea217cbbcfeb3", "src": "hda", - "uuid": "8986a1c0-102c-469b-b20d-012bfab02e3a" + "uuid": "e5fbb54d-ef6f-4bd9-9a45-a16d722f41f1" } }, "params": { "__input_ext": "\"input\"", "adv": "{\"allow_edits\": true, \"use_file_names_as_ids\": true}", - "chromInfo": "\"/tmp/tmpbjg5_060/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", + "chromInfo": "\"/tmp/tmpmomj1390/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", "dbkey": "\"?\"", + "genbank_files": "{\"values\": [{\"id\": 2, \"src\": \"hdca\"}]}", "methylation_protection": "true" }, "state": "ok", - "stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.70it/s, now=None]\r \r", + "stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.76it/s, now=None]\r \r", "stdout": "Part names were not truncated\n", "tool_id": "domestication", - "tool_stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.70it/s, now=None]\r \r", + "tool_stderr": "\rrecord: 0%| | 0/7 [00:00<?, ?it/s, now=None]\rrecord: 43%|\u2588\u2588\u2588\u2588\u258e | 3/7 [00:01<00:02, 1.76it/s, now=None]\r \r", "tool_stdout": "Part names were not truncated\n", - "update_time": "2025-05-12T10:20:09.457096", + "update_time": "2025-05-12T15:20:08.233126", "user_email": "planemo@galaxyproject.org", - "user_id": "f16125b2a7e364b6" + "user_id": "e660c01bdba47572" }, "status": "success", "test_index": 1, - "time_seconds": 34.99931049346924, + "time_seconds": 33.191433906555176, "tool_id": "domestication", - "tool_version": "0.1.0+galaxy0" + "tool_version": "0.1.0+galaxy1" }, "has_data": true, "id": "domestication-1"