|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="blockclust" version="1.0">
|
|
|
4 <install version="1.0">
|
|
|
5 <actions>
|
|
|
6 <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-1.0.tar.gz</action>
|
|
|
7 <action type="shell_command">make</action>
|
|
|
8 <action type="move_file">
|
|
|
9 <source>BlockClust</source>
|
|
|
10 <destination>$INSTALL_DIR/bin</destination>
|
|
|
11 </action>
|
|
|
12 <action type="move_file">
|
|
|
13 <source>BlockClustPipeLine.pl</source>
|
|
|
14 <destination>$INSTALL_DIR/bin</destination>
|
|
|
15 </action>
|
|
1
|
16 <action type="move_file">
|
|
|
17 <source>blockclust.config</source>
|
|
|
18 <destination>$INSTALL_DIR/data/</destination>
|
|
|
19 </action>
|
|
|
20 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/dm3.tar.gz</action>
|
|
2
|
21 <action type="shell_command">tar -xfvz dm3.tar.gz -C $INSTALL_DIR/data/annotations/</action>
|
|
1
|
22 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/hg19.tar.gz</action>
|
|
2
|
23 <action type="shell_command">tar -xfvz hg19.tar.gz -C $INSTALL_DIR/data/annotations/</action>
|
|
1
|
24 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/mm10.tar.gz</action>
|
|
2
|
25 <action type="shell_command">tar -xfvz mm10.tar.gz -C $INSTALL_DIR/data/annotations/</action>
|
|
1
|
26 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/panTro4.tar.gz</action>
|
|
2
|
27 <action type="shell_command">tar -xfvz panTro4.tar.gz -C $INSTALL_DIR/data/annotations/</action>
|
|
1
|
28 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/rheMac3.tar.gz</action>
|
|
2
|
29 <action type="shell_command">tar -xfvz rheMac3.tar.gz -C $INSTALL_DIR/data/annotations/</action>
|
|
0
|
30 <action type="set_environment">
|
|
|
31 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
|
|
|
32 <environment_variable name="BLOCKCLUST_DATA_PATH" action="prepend_to">$INSTALL_DIR/data</environment_variable>
|
|
|
33 </action>
|
|
|
34 </actions>
|
|
|
35 </install>
|
|
|
36 <readme>
|
|
|
37
|
|
|
38 </readme>
|
|
|
39 </package>
|
|
|
40 </tool_dependency>
|
