Mercurial > repos > rnateam > blockclust

diff tool_dependencies.xml @ 1:f5600b583d85 draft

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Uploaded
author rnateam
date Mon, 21 Oct 2013 11:25:02 -0400
parents 91fb7edca344
children 0deb03bc35df
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Oct 21 11:07:32 2013 -0400
+++ b/tool_dependencies.xml	Mon Oct 21 11:25:02 2013 -0400
@@ -13,8 +13,20 @@
                     <source>BlockClustPipeLine.pl</source>
                     <destination>$INSTALL_DIR/bin</destination>
                 </action>
-                <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0.tar.gz</action>
-                <action type="shell_command">tar xfvz blockclust-data-1.0.tar.gz -C $INSTALL_DIR/data/</action>
+                <action type="move_file">
+                    <source>blockclust.config</source>
+                    <destination>$INSTALL_DIR/data/</destination>
+                </action>
+                <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/dm3.tar.gz</action>
+                <action type="shell_command">tar -xfv dm3.tar.gz -C $INSTALL_DIR/data/annotations/</action>
+                <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/hg19.tar.gz</action>
+                <action type="shell_command">tar -xfv hg19.tar.gz -C $INSTALL_DIR/data/annotations/</action>
+                <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/mm10.tar.gz</action>
+                <action type="shell_command">tar -xfv mm10.tar.gz -C $INSTALL_DIR/data/annotations/</action>
+                <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/panTro4.tar.gz</action>
+                <action type="shell_command">tar -xfv panTro4.tar.gz -C $INSTALL_DIR/data/annotations/</action>
+                <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/rheMac3.tar.gz</action>
+                <action type="shell_command">tar -xfv rheMac3.tar.gz -C $INSTALL_DIR/data/annotations/</action>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                     <environment_variable name="BLOCKCLUST_DATA_PATH" action="prepend_to">$INSTALL_DIR/data</environment_variable>