Mercurial > repos > rnateam > blockclust

comparison tool_dependencies.xml @ 2:0deb03bc35df draft

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author rnateam
date Mon, 21 Oct 2013 11:34:09 -0400
parents f5600b583d85
children
comparison
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1:f5600b583d85 2:0deb03bc35df
16 <action type="move_file"> 16 <action type="move_file">
17 <source>blockclust.config</source> 17 <source>blockclust.config</source>
18 <destination>$INSTALL_DIR/data/</destination> 18 <destination>$INSTALL_DIR/data/</destination>
19 </action> 19 </action>
20 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/dm3.tar.gz</action> 20 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/dm3.tar.gz</action>
21 <action type="shell_command">tar -xfv dm3.tar.gz -C $INSTALL_DIR/data/annotations/</action> 21 <action type="shell_command">tar -xfvz dm3.tar.gz -C $INSTALL_DIR/data/annotations/</action>
22 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/hg19.tar.gz</action> 22 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/hg19.tar.gz</action>
23 <action type="shell_command">tar -xfv hg19.tar.gz -C $INSTALL_DIR/data/annotations/</action> 23 <action type="shell_command">tar -xfvz hg19.tar.gz -C $INSTALL_DIR/data/annotations/</action>
24 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/mm10.tar.gz</action> 24 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/mm10.tar.gz</action>
25 <action type="shell_command">tar -xfv mm10.tar.gz -C $INSTALL_DIR/data/annotations/</action> 25 <action type="shell_command">tar -xfvz mm10.tar.gz -C $INSTALL_DIR/data/annotations/</action>
26 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/panTro4.tar.gz</action> 26 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/panTro4.tar.gz</action>
27 <action type="shell_command">tar -xfv panTro4.tar.gz -C $INSTALL_DIR/data/annotations/</action> 27 <action type="shell_command">tar -xfvz panTro4.tar.gz -C $INSTALL_DIR/data/annotations/</action>
28 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/rheMac3.tar.gz</action> 28 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/rheMac3.tar.gz</action>
29 <action type="shell_command">tar -xfv rheMac3.tar.gz -C $INSTALL_DIR/data/annotations/</action> 29 <action type="shell_command">tar -xfvz rheMac3.tar.gz -C $INSTALL_DIR/data/annotations/</action>
30 <action type="set_environment"> 30 <action type="set_environment">
31 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 31 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
32 <environment_variable name="BLOCKCLUST_DATA_PATH" action="prepend_to">$INSTALL_DIR/data</environment_variable> 32 <environment_variable name="BLOCKCLUST_DATA_PATH" action="prepend_to">$INSTALL_DIR/data</environment_variable>
33 </action> 33 </action>
34 </actions> 34 </actions>