Mercurial > repos > proteore > proteore_data_manager

changeset 23:ebdd4961c6c2 draft

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planemo upload commit 03015f58ac7e7ba3cc44ba0d8899eacfaaf5a134-dirty
author proteore
date Thu, 09 May 2019 05:28:22 -0400
parents 4296fb613d9d
children 6cbb76823b7b
files data_manager/resource_building.py data_manager/resource_building.xml tool-data/proteore_id_mapping_Human.loc.sample tool-data/proteore_id_mapping_Mouse.loc.sample tool-data/proteore_id_mapping_Rat.loc.sample
diffstat 5 files changed, 8 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/resource_building.py	Tue May 07 10:29:13 2019 -0400
+++ b/data_manager/resource_building.py	Thu May 09 05:28:22 2019 -0400
@@ -244,7 +244,7 @@
     name_dict={"Human" : "Homo sapiens", "Mouse" : "Mus musculus", "Rat" : "Rattus norvegicus"}
     name = species +" (" + name_dict[species]+" "+time.strftime("%d/%m/%Y")+")"
     release = species+"_id_mapping_"+ time.strftime("%d-%m-%Y")
-    id = str(10000000000 - int(time.strftime("%d%m%Y")))    #new ids must be inferior to previous id -> sort by <filter> in xml only in descending order
+    id = str(10000000000 - int(time.strftime("%Y%m%d")))    #new ids must be inferior to previous id -> sort by <filter> in xml only in descending order
 
     data_table_entry = dict(id=id, release=release , name = name, species = species, value = path)
     _add_data_table_entry(data_manager_dict, data_table_entry, "proteore_id_mapping_"+species)
--- a/data_manager/resource_building.xml	Tue May 07 10:29:13 2019 -0400
+++ b/data_manager/resource_building.xml	Thu May 09 05:28:22 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2019.05.07.02" tool_type="manage_data">
+<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2019.05.09" tool_type="manage_data">
 <description>
 to create or update reference files for proteore tools
 </description>
--- a/tool-data/proteore_id_mapping_Human.loc.sample	Tue May 07 10:29:13 2019 -0400
+++ b/tool-data/proteore_id_mapping_Human.loc.sample	Thu May 09 05:28:22 2019 -0400
@@ -1,3 +1,3 @@
 #This file lists the locations of reference file for id_converter tool
-#<id>	<release>   <name>	<value>	<path>
-#9979819899   human_id_mapping_01-01-2018	Human (homo sapiens)	human_id_mapping	tool-data/human_id_mapping.tsv
+#<id>	<release>   <name>	<species>	<value>
+9979818977	human_id_mapping_23-10-2018	Human (homo sapiens 23/10/2018)	Human	tool-data/human_id_mapping_23-10-2018.tsv
\ No newline at end of file
--- a/tool-data/proteore_id_mapping_Mouse.loc.sample	Tue May 07 10:29:13 2019 -0400
+++ b/tool-data/proteore_id_mapping_Mouse.loc.sample	Thu May 09 05:28:22 2019 -0400
@@ -1,3 +1,3 @@
 #This file lists the locations of reference file for id_converter tool
-#<id>	<release>   <name>	<value>	<path>
-#9979819899 mouse_id_mapping_01-01-2018	Mouse (Mus musculus)	mouse_id_mapping	tool-data/mouse_id_mapping.tsv
+#<id>	<release>   <name>	<species>	<value>
+9979818977	mouse_id_mapping_23-10-2018	Mouse (Mus musculus 23-10-2018)	Mouse	tool-data/mouse_id_mapping_23-10-2018.tsv
--- a/tool-data/proteore_id_mapping_Rat.loc.sample	Tue May 07 10:29:13 2019 -0400
+++ b/tool-data/proteore_id_mapping_Rat.loc.sample	Thu May 09 05:28:22 2019 -0400
@@ -1,3 +1,3 @@
 #This file lists the locations of reference file for id_converter tool
-#<id>	<release>   <name>	<value>	<path>
-#9979819899 rat_id_mapping_01-01-2018	Rat (Rattus norvegicus)	rat_id_mapping	tool-data/rat_id_mapping.tsv
+#<id>	<release>   <name>	<species>	<value>
+9979818977	rat_id_mapping_23-10-2018	Rat (Rattus norvegicus 23-10-2018)	Rat	tool-data/rat_id_mapping_23-10-2018.tsv