Mercurial > repos > proteore > proteore_data_manager
changeset 22:4296fb613d9d draft
planemo upload commit e05ccbf13c33b97ab441e2f8bc4b5bc746a378df-dirty
| author | proteore |
|---|---|
| date | Tue, 07 May 2019 10:29:13 -0400 |
| parents | 026177e4ff4b |
| children | ebdd4961c6c2 |
| files | data_manager/resource_building.py data_manager/resource_building.xml |
| diffstat | 2 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/data_manager/resource_building.py Tue May 07 10:17:48 2019 -0400 +++ b/data_manager/resource_building.py Tue May 07 10:29:13 2019 -0400 @@ -152,7 +152,8 @@ #print("selected_tab ok") #get uniprot-AC reviewed - query = "https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:"+species_dict[species]+"&format=list" + organism = species_dict[species].split("_")[1] + query = "https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:"+organism+"&format=list" with requests.Session() as s: download = s.get(query)
--- a/data_manager/resource_building.xml Tue May 07 10:17:48 2019 -0400 +++ b/data_manager/resource_building.xml Tue May 07 10:29:13 2019 -0400 @@ -1,4 +1,4 @@ -<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2019.05.07.01" tool_type="manage_data"> +<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2019.05.07.02" tool_type="manage_data"> <description> to create or update reference files for proteore tools </description>