Mercurial > repos > pimarin > data_manager_fetch_plasmidfinder

diff plasmidfinder-db/RepL.fsa @ 3:5ffc68b4ec04 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit 5c04f6f49deca3735a752e5ac29027ba9d5ff000-dirty
author pimarin
date Fri, 17 Feb 2023 14:03:19 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/plasmidfinder-db/RepL.fsa	Fri Feb 17 14:03:19 2023 +0000
@@ -0,0 +1,22 @@
+>rep12_1_CDS32(pBMB67)_DQ363750
+atggaacaagttaaacatattttagagcctataacagagtacacatcgcttgatgtaatgcgttttatggttcatggtgcattatatgaaaaatcacctaaaaattggacaatggatgatagaaagagagaaatgcaacgtgaaagattaagagaggttggagttgttcatgtaactactggaaaagagcaactttctacgggacaaagtattgtggtaagtagctttgagacattagaacgcttaaacaatcatttgacacactggacaccacaagtctatatgtggggaaaggctaataatgaagggcgtaattttgaaaacattcgtttcattacatgtgttggagtagaaatagataaaaaaattagtcttgaagaaattcattatgcagcagcagtaaataacttgccatccccaagtgttattctttcaacaccacgaggattgcaatggttttatgtattctctacaccatttttgacagaaaaaggccgtaaggcaggtcgttttgtttctgaagaaattaaaagagcctttgtaaatgtcatggatgctagtgaagtagaagaaggaactacaaagcctatatttgaattagaagcggatcttggggcttattcgctagggtattttagaattccacgagaagataatgtcctttactttaatggacaagcattgaactcagaatgggctttagcatgggctaaagaacaatctaggaagcataaaagaccagcggttgctaatacttcttcaagtagaatgtataaaaaggttggcatcatggaagatccagcaattcaaagtattatcaataacgtatttttacgtggctgtaaaggcaagctaggccgtaataatgctgtatttattttatctttagctatgaaatatgaaggtaaaacagaaagtgaaatcattgacaaaatagatgaatggaattctcaaataaaatcaccattaaagcatactgagattttacgtactgttagaagtgccatgaatgataaatataatgcgcctaaaaaggattatgtagaagaactggctgaaatgagaatggaatttgtctttgatatccgtacaccagcaaaggaacgcttagaccgtcagcaaagccattattcagaatgggagcaagatattatagagatggtagagcagcaatgcacgtctgatgcaccttatttatgcggctctctacgtgctttagcgcaaaaaattggtgaagagtcaccagtaggtaaagcaatgaataaatctagcttatccgatgtattaaaggtttctaaaaaattaattgtaaagactaatggaaaaaagggcagaaatgctcgtacatatattacaacaagaagtgtattactgaaatccaataaacataactttaaagcctttttattagggaaattagcattcaatgaagagatcgagagcactacacttgaagtacaatttcgaggccaaacaagcgaacctgaagcaaataaaaatagtagaaataaacgctctgggccagggggataa
+>rep12_2_CDS1(plasmid)_AY278324
+atggaacaagttaaacatattttagagcctataacagagtacacatcgcttgatgtaatgcgttttatggttcatggtgcattatatgaaaaatcacctaaaaattggacaatggatgatagaaagagagaaatgcaacgtgaaagattaagagaggttggagttgttcatgtaactactggaaaagagcaactttctacgggacaaagtattgtggtaagtagctttgagacattagaacgcttaaacaatcatttgacacactggacaccacaagtctatatgtggggaaaggctaataatgaagggcgtaattttgaaaacattcgtttcattacatgtgttggagtagaaatagataaaaaaattagtcttgaagaaattcattatgcagcagcagtaaataacttgccatccccaagtgttattctttcaacaccacgaggattgcaatggttttatgtattctctacaccatttttgacagaaaaaggccgtaaggcaggtcgttttgtttctgaagaaattaaaagagcctttgtaaatgtcatggatgctagtgaagtagaagaaggaactacaaagcctatatttgaattagaagcggatcttggggcttattcgctagggtattttagaattccacgagaagataatgtcctttactttaatggacaagcattgaactcagaatgggctttagcatgggctaaagaacaatctaggaagcataaaagaccagcggttgctaatacttcttcaagtagaatgtataaaaaggttggcatcatggaagatccagcaattcaaagtattatcaataacgtatttttacgtggctgtaaaggcaagctaggccgtaataatgctgtatttattttatctttagctatgaaatatgaaggtaaaacagaaagtgaaatcattgacaaaatagatgaatggaattctcaaataaaatcaccattaaagcatactgagattttacgtactgttagaagtgccatgaatgataaatataatgcgcctaaaaaggattatgtagaagaactggctgaaatgagaatggaatttgtctttgatatccgtacaccagcaaaggaacgcttagaccgtcagcaaagccattattcagaatgggagcaagatattatagagatggtagagcagcaatgcacgtctgatgcaccttatttatgcggctctctacgtgctttagcgcaaaaaattggtgaagagtcaccagtaggtaaagcaatgaataaatctagcttatccgatgtattaaaggtttctaaaaaattaattgtaaagactaatggaaaaaagggcagaaatgctcgtacatatattacaacaagaagtgtattactgaaatccaataaacataactttaaagcctttttattagggaaattagcattcaatgaagagatcgagagcactacacttgaagtacaatttcgaggccaaacaagcgaacctgaagcaaataaaaatagttga
+>repUS45_1_rep(pKKS966)_FN677368
+ATGGCAGAATTACATGTACAAGATAAGATAGACCCTAAAAACCCTAATTCAATCAGTTTTGAAGCTAGAAAGAGACAATTAGAGGAAGATGAAAGACGAGAGAAAGAAGAACTTCAAAGACAAAAGAAAAGCCCTTACAGGAGTTGGGTACAAATGAATAAAGACGCTTATTCGGCAGAAGATTGGTTAATGTCAAAATCGCCAATTGCATATAGAATCTTTAAATTCTTAATAAACAACATGGATTCATACAATGCTGTTATGTGTTCTCAACCCGTATTACAAGAGCAATTTGACGTTAGTCGAGTAACTATATCAAGAGCAATAAAATTACTTAAAGAAAAACAATTCATTGATGTTTACAAATCAGGAACATCAAACGTTTACGCAGTTAATAAACAAATCGCTTGGAGTAGTTGGGGAAGTAACTTTAAACATGGAAAATTTGGTGCTAACATCATTCTTTCTGAAAGTGAACAAGATGAACAAGTAAAACTTGAAATCCAAAACATAAAGAGGTATCTCTTAAAGATTGCTAGAAAAACAGGTGCTATAATGATTCATTCAAATTTAGTTCATCGTGGAAACCATAGTAAAGAAAAATATTTACTTGCACGATTTCAAGAATGGGGTAAAGATGATGAGGGACTTGATATATAA
+>rep10b_1_rep(pUR2355)_JQ312422
+ATGAAAGAACGATATGGAACGGTATATAAAGGGAAAGAAGAGTTTATAAATAAAGACTCAGGAGAAGTAATACAGTTTGATAAGCTATATAGAGCACAAACAGGTGGAAACTTCGTAAAGATGTATATGGAAATGTTTGGACAAATGTTGGGCTTAATGAATAAAAGAGGAGAAGTAATGCAGTATCTTTTTAAAGACTTAAACCTATCAAGCAATACAGTAATAAAAACAGTTCGAGAACTCGCTAAAGAAACAAATACAAGTACAAAAACTGTAACAGAAACCCTTAAAATTATGGAAAAAGGAAACATTATAAAAAGAAAGACTGGAGTTATAATGATAAACCCAGCCTTATTAATGCGTGGAGATGATAATAAAAAACGTTATCTCTTACTAGAATTCGAGCAATTCAATAGAGAAAACGAATTAGAACACGCTTTAAATGAATATGAAAGTTTTAAGTAA
+>rep10b_3_rep(pSK3)_SAU96609
+ATGAAAGAACGCTATGGAACGGTATATAAAGGGAAAGAAGAATTCATAAATAAAGACTCAGGAGAAGTAATACAGTTTGATAAGCTATACAGAGCACAAACAGGTGGAAACTTCGTAAAGATGTACATGGAACTGTTTGGACAAATGTTGGGATTAATGAATAAAAGAGGGGAAGTAATGCAGTACCTTTTTAAAGACTTAAATCTATCAAGCAATACAGTAATAAAAACAGTTCGAGAACTTGCTAAAGAAACAAATACAAGTACAAAAACAGTAACAGAAACCCTTAAAATTATGGAAAAAGGAAACATTATAAAAAGAAAGACTGGAGTTATAATGATAAACCCAGCCTTATTAATGCGTGGAGATGATAGTAAAAAACGTTATCTCTTACTAGAATTTGAACAGTTCGATAGAGAAAACGAATTAGAACACGCTTTAAATGAATATGAAAGTTTTAAGTAA
+>rep10b_2_rep(pSK6)_U96610
+ATGAAAGAACGCTATGGAACAGTATATAAAGGGAAAGAAGAGTTTGTAAATAAAGACTCAGGAGAAGTAATACAGTTTGATAAGCTATATAGAGCACAAACAGGTGGAAACTTCGTGAAGATGTATATGGAACTGTTTGGAGAAATGTTGGGATTAATGAATAAAAGAGGAGAAGTAATGCAGTACCTTTTTAAAGACTTAAACCTATCAAGTAATACAGTAATAAAAACAGTTCGAGAACTTGCTAAAGAAACAAATACAAGTACAAAAACCGTAACAGAAACCCTTAAAATTATGGAAAAAGGAAACATTATAAAAAGAAAGACTGGAGTTATAATGATAAACCCAGCCTTATTAATGCGTGGAGATGATAGCAAAAAACGTTATCTCTTACTAGAATTTGAGCAATTCGATAGAGAAAACGAATTAGAACACGCTTTAAATGAATATGAAAGTTTTAAGTAA
+>rep10_6_rep(SAP093B)_GQ900442
+ATGAAAGAAAGATATGGAACAGTATATAAAGGCTCTCAGAGGCTCATAGACGAGGAAAGTGGAGAAGTAATAGAGGTAGATAAGCTATACCGTAAACAAACGTCTGGTAACTTTGTAAAAGCGTATATCGTCCAATTAATAAGTATGTTAGATATGATAGGCGGTAAAAAGCTCAAGATTGTTAATTATATATTAGATAATGTACATCTAAGTAATAACACAATGATAGCAACTGTTAGAGAAATAGCAGAAGGAACAAATACAAGCACGAAAACCGTAAATACAACGCTTAAAATCTTAGAAGAAGGAAATATCATTAAAAGAAGAACTGGAGCATTAATGCTAAACCCAGAGCTACTCATGAGAGGCGATGACCAAAAACAAAAATACCTCTTACTCGAATTTGGGAACTTTGAGCAAGAGGACGACCAAAAGCAAGAAAATGCTTTATCAGAATATTATTCTTTCAAGGAGTAG
+>rep10_2_CDS1(pIM13)_M13761
+Atgaaagaaagatatggaacagtctataaaggctctcagaggctcatagacgaagaaagtggagaagtcatagaggtagacaagttataccgtaaacaaacgtctggtaacttcgtaaaggcatatatagtgcaattaataagtatgttagatatgattggcggaaaaaaacttaaaatcgttaactatatcctagataatgtccacttaagtaacaatacaatgatagctacaacaagagaaatagcaaaagctacaggaacaagtctacaaacagtaataacaacacttaaaatcttagaagaaggaaatattataaaaagaaaaactggagtattaatgttaaaccctgaactactaatgagaggcgacgaccaaaaacaaaaatacctcttactcgaatttgggaactttgagcaagaggcaaatgaaatagattga
+>rep10_3_pNE131p1(pNE131)_NC001390
+ATGAAAGAAAGATATGGAACAGTCTATAAAGGCTCTCAGAGGCTCATAGACGAAGAAAGTGGAGAAGTCATAGAGGTAGACAAGTTATACCGTAAACAAACGTCTGGTAACTTCGTAAAGGCATATATAGTGCAATTAATAAGTATGTTAGATATGATTGGCGGAAAAAAACTTAAAATCGTTAACTATATCCTAGATAATGTCCACTTAAGTAACAATACAATGATAGCTACAACAAGAGAAATAGCAAAAGCTACAGGAACAAGTCTACAAACAGTAATAACAACACTTAAAATCTTAGAAGAAGGAAATATTATAAAAAGAAAAACTGGAGTATTAATGTTAAACCCTGAACTACTAATGAGAGGCGACGACCAAAAACAAAAATACCTCTTACTCGAATTTGGGAACTTTGAGCAAGAGGCAAATGAAAAACAAGAAAATGCACTTTATCTGATTATTATTCTTTCAAGGACTAGTATAACATAA
+>rep10_5_repL(pWBG738)_DQ088624
+ATGAAAGAAAGATATGGAACAGTCTATAAAGGCTCTCAGAGGCTCATAGACGAAGAAAGTGGAGAAGTCATAGAGGTAGACAAGTTATACCGTAAACAAACGTCTGGTAACTTCGTAAAGGCATATATAGTGCAATTAATAAGTATGTTAGATATGATTGGCGGAAAAAAACTTAAAATCGTCAACTATATCCTAGATAATGTCCACTTAAGTAACAATACAATGATAGCTACAACAAGAGAAATAGCAAAAGCTACAGGAACAAGTCTACAAACAGTAATAACAACACTTAAAATCTTAGAAGAAGGAAATATTATAAAAAGAAAAACTGGAGTATTAATGTTAAACCCTGAACTACTAATGAGAGGCGACGACCAAAAACAAAAATACCTCTTACTCGAATTTGGGAACTTTGAGCAAGAGGCAAATGAAAAACAAGAAAATGCATTATCTGATTATTATTCTTTCAAGGACTAG
+>rep10_4_repL(pDLK1)_GU562624
+ATGAAAGAAAGATATGGAACAGTCTATAAAGGCTCTCAGAGGCTCATAGACGAAGAAAGTGGAGAAGTCATAGAGGTAGACAAGTTATACCGTAAACAAACGTCTGGTAACTTCGTAAAGGCATATATAGTGCAATTAATAAGTATGTTAGATATGATTGGCGGAAAAAAACTTAAAATCGTTAACTATATCCTAGATAATGTCCACTTAAGTAACAATACAATGATAGCTACAACAAGAGAAATAGCAAAAGCTACAGGAACAAGTCTACAAACAGTAATAACAACACTTAAAATCTTAGAAGAAGGAAATATTATAAAAAGAAAAACTGGAGTATTAATGTTAAACCCTGAACTACTAATGAGAGGCGACGACCAAAAACAAAAATACCTCTTACTCGAATTTGGGAACTTTGAGCAAGAGGCAAATGAAAAACAAGAAAATGCATTATCTGATTATTATTCTTTCAAGGACTAG