Mercurial > repos > mvdbeek > package_ngs_1_1_3

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author mvdbeek
date Sat, 15 Aug 2015 11:02:36 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <!-- <package name="ncbi_vdb" version="2.5.2">
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4 <repository name="package_ncbi_vdb_2_5_2" owner="mvdbeek" prior_installation_required="True" />
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5 </package>
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6 -->
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7 <package name="perl" version="5.18.1">
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8 <repository changeset_revision="4d932b1a336b" name="package_perl_5_18_test_sed" owner="mvdbeek" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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9 </package>
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10 <package name="ngs" version="1.1.3">
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11 <install version="1.0">
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12 <actions>
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13 <action type="setup_perl_environment">
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14 <repository changeset_revision="4d932b1a336b" name="package_perl_5_18_test_sed" owner="mvdbeek" toolshed="https://testtoolshed.g2.bx.psu.edu">
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15 <package name="perl" version="5.18.1" />
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16 </repository>
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17 <package>File::Copy</package>
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18 <package>File::Spec</package>
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19 <package>File::Copy::Recursive</package>
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20 </action>
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21 <action target_filename="ngs-1.1.3.tar.gz" type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
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22 <action type="autoconf">--prefix=$INSTALL_DIR --build=$INSTALL_DIR</action>
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23 <action type="set_environment">
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24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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25 </action>
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26 </actions>
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27 </install>
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28 <readme>
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29 ncbi-ngs, required for sra-tools package.
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30
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31 </readme>
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32 </package>
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33 </tool_dependency>