Mercurial > repos > mvdbeek > package_ngs_1_1_3

diff tool_dependencies.xml @ 5:0fe07850acd0 draft

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planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
author mvdbeek
date Sat, 15 Aug 2015 10:13:30 -0400
parents 35f562227199
children b2c6f4a8dce2
line wrap: on
line diff
--- a/tool_dependencies.xml	Sat Aug 15 10:09:41 2015 -0400
+++ b/tool_dependencies.xml	Sat Aug 15 10:13:30 2015 -0400
@@ -1,23 +1,23 @@
 <?xml version="1.0"?>
 <tool_dependency>
-<!--    <package name="ncbi_vdb" version="2.5.2">
-        <repository name="package_ncbi_vdb_2_5_2" owner="mvdbeek" prior_installation_required="True" />
+    <!--    <package name="ncbi_vdb" version="2.5.2">
+            <repository name="package_ncbi_vdb_2_5_2" owner="mvdbeek" prior_installation_required="True" />
+        </package>
+    -->
+    <package name="perl" version="5.18.1">
+        <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
--->
     <package name="ngs" version="1.1.3">
         <install version="1.0">
             <actions>
-    <package name="perl" version="5.18.1">
-        <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
-<action type="setup_perl_environment">
-    <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
-        <package name="perl" version="5.18.1" />
-    </repository>
-    <package>File::Copy</package>
-    <package>File::Spec</package>
-    <package>File::Copy::Recursive</package>
-</action>
+                <action type="setup_perl_environment">
+                    <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="perl" version="5.18.1" />
+                    </repository>
+                    <package>File::Copy</package>
+                    <package>File::Spec</package>
+                    <package>File::Copy::Recursive</package>
+                </action>
                 <action target_filename="ngs-1.1.3.tar.gz" type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
                 <action type="autoconf">--prefix=$INSTALL_DIR --build=$INSTALL_DIR</action>
                 <action type="set_environment">
@@ -25,9 +25,9 @@
                 </action>
             </actions>
         </install>
-    <readme>
-  ncbi-ngs, required for sra-tools package.
+        <readme>
+            ncbi-ngs, required for sra-tools package.
 
-    </readme>
-  </package>
+        </readme>
+    </package>
 </tool_dependency>