Mercurial > repos > mvdbeek > package_mirdeep2

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author mvdbeek
date Mon, 17 Aug 2015 13:59:44 -0400
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6fbc70531479 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="bowtie" version="1.0.0">
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4 <repository changeset_revision="0931da782b5d" name="package_bowtie_1_0_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
6fbc70531479 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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5 </package>
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6 <package name="vienna_rna" version="1.8.5">
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7 <repository changeset_revision="39923a0c80df" name="package_vienna_rna_1_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
6fbc70531479 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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8 </package>
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9 <package name="squid" version="1.9g">
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10 <repository changeset_revision="8ebcef4aedfb" name="package_squid_1_9g" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="randfold" version="2.0">
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13 <repository changeset_revision="3ff0bc80c628" name="package_randfold_2_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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14 </package>
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15 <package name="mirdeep2" version="0.0.7">
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16 <install version="1.0">
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17 <actions>
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18 <action type="setup_perl_environment">
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19 <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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20 <package name="perl" version="5.18.1" />
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21 </repository>
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22 <package>Compress::Zlib</package>
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23 <package>PDF::API2</package>
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24 </action>
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25 <action type="download_by_url">https://www.mdc-berlin.de/43969303/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/mirdeep2_0_0_7.zip</action>
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26 <action type="move_directory_files">
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27 <source_directory>mirdeep2_0_0_7</source_directory>
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28 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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29 </action>
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30 </actions>
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31 </install>
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32 <readme>
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33 </readme>
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34 </package>
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35 </tool_dependency>