Mercurial > repos > mvdbeek > package_mirdeep2

view tool_dependencies.xml @ 0:6fbc70531479 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author mvdbeek
date Mon, 17 Aug 2015 13:59:44 -0400
parents
children
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="bowtie" version="1.0.0">
        <repository changeset_revision="0931da782b5d" name="package_bowtie_1_0_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="vienna_rna" version="1.8.5">
        <repository changeset_revision="39923a0c80df" name="package_vienna_rna_1_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="squid" version="1.9g">
        <repository changeset_revision="8ebcef4aedfb" name="package_squid_1_9g" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="randfold" version="2.0">
        <repository changeset_revision="3ff0bc80c628" name="package_randfold_2_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="mirdeep2" version="0.0.7">
        <install version="1.0">
            <actions>
                <action type="setup_perl_environment">
                    <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="perl" version="5.18.1" />
                    </repository>
                    <package>Compress::Zlib</package>
                    <package>PDF::API2</package>
                </action>
                <action type="download_by_url">https://www.mdc-berlin.de/43969303/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/mirdeep2_0_0_7.zip</action>
                <action type="move_directory_files">
                    <source_directory>mirdeep2_0_0_7</source_directory>
                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>