Mercurial > repos > mvdbeek > package_mirdeep2
comparison tool_dependencies.xml @ 0:6fbc70531479 draft default tip
planemo upload for repository https://bitbucket.org/drosofff/gedtools/
| author | mvdbeek |
|---|---|
| date | Mon, 17 Aug 2015 13:59:44 -0400 |
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| children |
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| -1:000000000000 | 0:6fbc70531479 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="bowtie" version="1.0.0"> | |
| 4 <repository changeset_revision="0931da782b5d" name="package_bowtie_1_0_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="vienna_rna" version="1.8.5"> | |
| 7 <repository changeset_revision="39923a0c80df" name="package_vienna_rna_1_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 8 </package> | |
| 9 <package name="squid" version="1.9g"> | |
| 10 <repository changeset_revision="8ebcef4aedfb" name="package_squid_1_9g" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 11 </package> | |
| 12 <package name="randfold" version="2.0"> | |
| 13 <repository changeset_revision="3ff0bc80c628" name="package_randfold_2_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 14 </package> | |
| 15 <package name="mirdeep2" version="0.0.7"> | |
| 16 <install version="1.0"> | |
| 17 <actions> | |
| 18 <action type="setup_perl_environment"> | |
| 19 <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> | |
| 20 <package name="perl" version="5.18.1" /> | |
| 21 </repository> | |
| 22 <package>Compress::Zlib</package> | |
| 23 <package>PDF::API2</package> | |
| 24 </action> | |
| 25 <action type="download_by_url">https://www.mdc-berlin.de/43969303/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/mirdeep2_0_0_7.zip</action> | |
| 26 <action type="move_directory_files"> | |
| 27 <source_directory>mirdeep2_0_0_7</source_directory> | |
| 28 <destination_directory>$INSTALL_DIR/bin</destination_directory> | |
| 29 </action> | |
| 30 </actions> | |
| 31 </install> | |
| 32 <readme> | |
| 33 </readme> | |
| 34 </package> | |
| 35 </tool_dependency> |