Mercurial > repos > kls286 > chap_test_20230328

annotate saxswaxs.xml @ 15:c01900e93daa draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 52e0f071d66addeaabb3b5ad28bb4734b6f7cece-dirty
author kls286
date Thu, 30 Mar 2023 14:38:19 +0000
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15
c01900e93daa planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 52e0f071d66addeaabb3b5ad28bb4734b6f7cece-dirty
kls286
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1 <tool id="saxswaxs-test" name="SAXSWAXS Demo Pipeline" version="0.1.0+galaxy0" python_template_version="3.5" profile="21.05">
c01900e93daa planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 52e0f071d66addeaabb3b5ad28bb4734b6f7cece-dirty
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2 <requirements>
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3 <requirement type="package" version="0.0.2">chessanalysispipeline</requirement>
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4 <requirement type="package" version="2023.3.0">pyfai</requirement>
c01900e93daa planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 52e0f071d66addeaabb3b5ad28bb4734b6f7cece-dirty
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5 </requirements>
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6 <command detect_errors="exit_code"><![CDATA[
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7 cp '$mapconfig' map.yaml &&
c01900e93daa planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 52e0f071d66addeaabb3b5ad28bb4734b6f7cece-dirty
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8 cp '$integrationconfig' integration.yaml &&
c01900e93daa planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 52e0f071d66addeaabb3b5ad28bb4734b6f7cece-dirty
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9 cp '$__tool_directory__/saxswaxs-config/pipeline.yaml' saxswaxs-pipeline.yaml &&
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10 CHAP --config saxswaxs-pipeline.yaml
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11 ]]></command>
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12 <inputs>
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13 <param type="data" name="mapconfig" format="yaml" />
c01900e93daa planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 52e0f071d66addeaabb3b5ad28bb4734b6f7cece-dirty
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14 <param type="data" name="integrationconfig" format="yaml" />
c01900e93daa planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 52e0f071d66addeaabb3b5ad28bb4734b6f7cece-dirty
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15 </inputs>
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16 <outputs>
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17 <data name="specdata" label="Map of SPEC data" format="nex" from_work_dir="map_specdata.nxs"/>
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18 <data name="reduceddata" label="Map of reduced data" format="nex" from_work_dir="map_reduceddata.nxs"/>
c01900e93daa planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 52e0f071d66addeaabb3b5ad28bb4734b6f7cece-dirty
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19 </outputs>
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20 <tests>
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21 <test>
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22 <param name="mapconfig" value="saxswaxs-config/map.yaml"/>
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23 <param name="integrationconfig" value="saxswaxs-config/integration.yaml"/>
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24 <output name="specdata" value="map_specdata.nxs"/>
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25 <output name="reduceddata" value="map_reduceddata.nxs"/>
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26 </test>
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27 </tests>
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28 <help><![CDATA[
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29 usage: PROG [-h] [--config CONFIG] [--verbose]
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30
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31 options:
c01900e93daa planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 52e0f071d66addeaabb3b5ad28bb4734b6f7cece-dirty
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32 -h, --help show this help message and exit
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33 --config CONFIG Input configuration file
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34 --verbose verbose output
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35
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36 ]]></help>
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37 <citations>
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38 <citation type="bibtex">
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39 @misc{githubChessAnalysisPipeline,
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40 author = {LastTODO, FirstTODO},
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41 year = {TODO},
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42 title = {CHAPSAXSWAXSdemo},
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43 publisher = {GitHub},
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44 journal = {GitHub repository},
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45 url = {https://github.com/CHESSComputing/ChessAnalysisPipeline},
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46 }</citation>
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47 </citations>
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48 </tool>