diff saxswaxs.xml @ 15:c01900e93daa draft

planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 52e0f071d66addeaabb3b5ad28bb4734b6f7cece-dirty
author kls286
date Thu, 30 Mar 2023 14:38:19 +0000
parents
children 41d29b50d9ca
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/saxswaxs.xml	Thu Mar 30 14:38:19 2023 +0000
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+<tool id="saxswaxs-test" name="SAXSWAXS Demo Pipeline" version="0.1.0+galaxy0" python_template_version="3.5" profile="21.05">
+    <requirements>
+      <requirement type="package" version="0.0.2">chessanalysispipeline</requirement>
+      <requirement type="package" version="2023.3.0">pyfai</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        cp '$mapconfig' map.yaml &&
+	cp '$integrationconfig' integration.yaml &&
+	cp '$__tool_directory__/saxswaxs-config/pipeline.yaml' saxswaxs-pipeline.yaml &&
+	CHAP --config saxswaxs-pipeline.yaml
+    ]]></command>
+    <inputs>
+        <param type="data" name="mapconfig" format="yaml" />
+        <param type="data" name="integrationconfig" format="yaml" />
+    </inputs>
+    <outputs>
+        <data name="specdata" label="Map of SPEC data" format="nex" from_work_dir="map_specdata.nxs"/>
+	<data name="reduceddata" label="Map of reduced data" format="nex" from_work_dir="map_reduceddata.nxs"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="mapconfig" value="saxswaxs-config/map.yaml"/>
+            <param name="integrationconfig" value="saxswaxs-config/integration.yaml"/>
+            <output name="specdata" value="map_specdata.nxs"/>
+            <output name="reduceddata" value="map_reduceddata.nxs"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+        usage: PROG [-h] [--config CONFIG] [--verbose]
+
+options:
+  -h, --help       show this help message and exit
+  --config CONFIG  Input configuration file
+  --verbose        verbose output
+
+    ]]></help>
+    <citations>
+        <citation type="bibtex">
+@misc{githubChessAnalysisPipeline,
+  author = {LastTODO, FirstTODO},
+  year = {TODO},
+  title = {CHAPSAXSWAXSdemo},
+  publisher = {GitHub},
+  journal = {GitHub repository},
+  url = {https://github.com/CHESSComputing/ChessAnalysisPipeline},
+}</citation>
+    </citations>
+</tool>