Mercurial > repos > kls286 > chap_test_20230328
diff saxswaxs.xml @ 15:c01900e93daa draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 52e0f071d66addeaabb3b5ad28bb4734b6f7cece-dirty
| author | kls286 |
|---|---|
| date | Thu, 30 Mar 2023 14:38:19 +0000 |
| parents | |
| children | 41d29b50d9ca |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/saxswaxs.xml Thu Mar 30 14:38:19 2023 +0000 @@ -0,0 +1,48 @@ +<tool id="saxswaxs-test" name="SAXSWAXS Demo Pipeline" version="0.1.0+galaxy0" python_template_version="3.5" profile="21.05"> + <requirements> + <requirement type="package" version="0.0.2">chessanalysispipeline</requirement> + <requirement type="package" version="2023.3.0">pyfai</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + cp '$mapconfig' map.yaml && + cp '$integrationconfig' integration.yaml && + cp '$__tool_directory__/saxswaxs-config/pipeline.yaml' saxswaxs-pipeline.yaml && + CHAP --config saxswaxs-pipeline.yaml + ]]></command> + <inputs> + <param type="data" name="mapconfig" format="yaml" /> + <param type="data" name="integrationconfig" format="yaml" /> + </inputs> + <outputs> + <data name="specdata" label="Map of SPEC data" format="nex" from_work_dir="map_specdata.nxs"/> + <data name="reduceddata" label="Map of reduced data" format="nex" from_work_dir="map_reduceddata.nxs"/> + </outputs> + <tests> + <test> + <param name="mapconfig" value="saxswaxs-config/map.yaml"/> + <param name="integrationconfig" value="saxswaxs-config/integration.yaml"/> + <output name="specdata" value="map_specdata.nxs"/> + <output name="reduceddata" value="map_reduceddata.nxs"/> + </test> + </tests> + <help><![CDATA[ + usage: PROG [-h] [--config CONFIG] [--verbose] + +options: + -h, --help show this help message and exit + --config CONFIG Input configuration file + --verbose verbose output + + ]]></help> + <citations> + <citation type="bibtex"> +@misc{githubChessAnalysisPipeline, + author = {LastTODO, FirstTODO}, + year = {TODO}, + title = {CHAPSAXSWAXSdemo}, + publisher = {GitHub}, + journal = {GitHub repository}, + url = {https://github.com/CHESSComputing/ChessAnalysisPipeline}, +}</citation> + </citations> +</tool>
