Mercurial > repos > kls286 > chap_test_20230328
comparison saxswaxs.xml @ 15:c01900e93daa draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 52e0f071d66addeaabb3b5ad28bb4734b6f7cece-dirty
| author | kls286 |
|---|---|
| date | Thu, 30 Mar 2023 14:38:19 +0000 |
| parents | |
| children | 41d29b50d9ca |
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| 14:bca70009506d | 15:c01900e93daa |
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| 1 <tool id="saxswaxs-test" name="SAXSWAXS Demo Pipeline" version="0.1.0+galaxy0" python_template_version="3.5" profile="21.05"> | |
| 2 <requirements> | |
| 3 <requirement type="package" version="0.0.2">chessanalysispipeline</requirement> | |
| 4 <requirement type="package" version="2023.3.0">pyfai</requirement> | |
| 5 </requirements> | |
| 6 <command detect_errors="exit_code"><![CDATA[ | |
| 7 cp '$mapconfig' map.yaml && | |
| 8 cp '$integrationconfig' integration.yaml && | |
| 9 cp '$__tool_directory__/saxswaxs-config/pipeline.yaml' saxswaxs-pipeline.yaml && | |
| 10 CHAP --config saxswaxs-pipeline.yaml | |
| 11 ]]></command> | |
| 12 <inputs> | |
| 13 <param type="data" name="mapconfig" format="yaml" /> | |
| 14 <param type="data" name="integrationconfig" format="yaml" /> | |
| 15 </inputs> | |
| 16 <outputs> | |
| 17 <data name="specdata" label="Map of SPEC data" format="nex" from_work_dir="map_specdata.nxs"/> | |
| 18 <data name="reduceddata" label="Map of reduced data" format="nex" from_work_dir="map_reduceddata.nxs"/> | |
| 19 </outputs> | |
| 20 <tests> | |
| 21 <test> | |
| 22 <param name="mapconfig" value="saxswaxs-config/map.yaml"/> | |
| 23 <param name="integrationconfig" value="saxswaxs-config/integration.yaml"/> | |
| 24 <output name="specdata" value="map_specdata.nxs"/> | |
| 25 <output name="reduceddata" value="map_reduceddata.nxs"/> | |
| 26 </test> | |
| 27 </tests> | |
| 28 <help><![CDATA[ | |
| 29 usage: PROG [-h] [--config CONFIG] [--verbose] | |
| 30 | |
| 31 options: | |
| 32 -h, --help show this help message and exit | |
| 33 --config CONFIG Input configuration file | |
| 34 --verbose verbose output | |
| 35 | |
| 36 ]]></help> | |
| 37 <citations> | |
| 38 <citation type="bibtex"> | |
| 39 @misc{githubChessAnalysisPipeline, | |
| 40 author = {LastTODO, FirstTODO}, | |
| 41 year = {TODO}, | |
| 42 title = {CHAPSAXSWAXSdemo}, | |
| 43 publisher = {GitHub}, | |
| 44 journal = {GitHub repository}, | |
| 45 url = {https://github.com/CHESSComputing/ChessAnalysisPipeline}, | |
| 46 }</citation> | |
| 47 </citations> | |
| 48 </tool> |