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comparison snpEff_databases.xml @ 2:114f423f99c0 draft

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author iuc
date Tue, 07 Apr 2015 10:54:12 -0400
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1:1938721334b3 2:114f423f99c0
1 <tool id="snpEff_databases" name="SnpEff Available Databases" version="@WRAPPER_VERSION@.0">
2 <description></description>
3 <expand macro="requirements" />
4 <macros>
5 <import>snpEff_macros.xml</import>
6 </macros>
7 <command>
8 <![CDATA[
9 java -jar \$SNPEFF_JAR_PATH/snpEff.jar databases | grep -v '^---' | sed 's/^Genome/#Genome/' | sed 's/ *//g' > $snpeff_dbs
10 ]]>
11 </command>
12 <inputs>
13 </inputs>
14 <outputs>
15 <data format="tabular" name="snpeff_dbs" label="${tool.name} @SNPEFF_VERSION@ available databases" />
16 </outputs>
17 <expand macro="stdio" />
18 <help>
19
20 @EXTERNAL_DOCUMENTATION@
21
22 @CITATION_SECTION@
23
24 </help>
25 </tool>
26