Mercurial > repos > iuc > plasmidfinder

annotate test-data/test_2/logfile_test2.log @ 4:65b333eed5c2 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
author iuc
date Tue, 10 Feb 2026 17:52:55 +0000
parents f52df366f012
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
1 {'plasmidfinder': {'results': {'Gram Positive': {'Inc18': {'rep14a_2_ORF1(pKQ10)_EFU01917': {'HSP_length': 402,
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
2 'accession': 'EFU01917',
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
3 'contig_name': 'NA',
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
4 'coverage': 100.0,
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
5 'hit_id': 'rep14a_2_ORF1(pKQ10)_EFU01917',
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
6 'identity': 99.5,
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
7 'note': 'ORF1(pKQ10)',
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
8 'plasmid': 'rep14a',
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
9 'position_in_ref': '1..403',
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
10 'positions_in_contig': 'NA..NA',
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
11 'template_length': 402}},
0
f52df366f012 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/plasmidfinder commit 32b1446d0da698b945d7f8b5df6d251b9989d3b1
iuc
parents:
diff changeset
12 'Rep3': 'No hit found',
4
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
13 'Rep_trans': {'rep14a_2_ORF1(pKQ10)_EFU01917': {'HSP_length': 402,
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
14 'accession': 'EFU01917',
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
15 'contig_name': 'NA',
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
16 'coverage': 100.0,
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
17 'hit_id': 'rep14a_2_ORF1(pKQ10)_EFU01917',
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
18 'identity': 99.5,
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
19 'note': 'ORF1(pKQ10)',
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
20 'plasmid': 'rep14a',
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
21 'position_in_ref': '1..403',
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
22 'positions_in_contig': 'NA..NA',
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
23 'template_length': 402}}}},
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
24 'run_info': {'date': '10.02.2026', 'time': '15:20:44'},
0
f52df366f012 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/plasmidfinder commit 32b1446d0da698b945d7f8b5df6d251b9989d3b1
iuc
parents:
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25 'user_input': {'file_format': 'fastq',
4
65b333eed5c2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
iuc
parents: 0
diff changeset
26 'filename(s)': ['/tmp/tmp1yi7ks0w/files/0/e/3/dataset_0e36e86f-0bbd-4a32-940e-8e30997c8d02.dat'],
0
f52df366f012 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/plasmidfinder commit 32b1446d0da698b945d7f8b5df6d251b9989d3b1
iuc
parents:
diff changeset
27 'method': 'kma'}}}