Mercurial > repos > iuc > plasmidfinder

comparison test-data/test_2/logfile_test2.log @ 4:65b333eed5c2 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
author iuc
date Tue, 10 Feb 2026 17:52:55 +0000
parents f52df366f012
children
comparison
equal deleted inserted replaced
3:e9813d6ac5ab 4:65b333eed5c2
1 {'plasmidfinder': {'results': {'Gram Positive': {'Inc18': 'No hit found', 1 {'plasmidfinder': {'results': {'Gram Positive': {'Inc18': {'rep14a_2_ORF1(pKQ10)_EFU01917': {'HSP_length': 402,
2 'accession': 'EFU01917',
3 'contig_name': 'NA',
4 'coverage': 100.0,
5 'hit_id': 'rep14a_2_ORF1(pKQ10)_EFU01917',
6 'identity': 99.5,
7 'note': 'ORF1(pKQ10)',
8 'plasmid': 'rep14a',
9 'position_in_ref': '1..403',
10 'positions_in_contig': 'NA..NA',
11 'template_length': 402}},
2 'Rep3': 'No hit found', 12 'Rep3': 'No hit found',
3 'Rep_trans': 'No hit found'}}, 13 'Rep_trans': {'rep14a_2_ORF1(pKQ10)_EFU01917': {'HSP_length': 402,
4 'run_info': {'date': '09.09.2022', 'time': '08:53:07'}, 14 'accession': 'EFU01917',
15 'contig_name': 'NA',
16 'coverage': 100.0,
17 'hit_id': 'rep14a_2_ORF1(pKQ10)_EFU01917',
18 'identity': 99.5,
19 'note': 'ORF1(pKQ10)',
20 'plasmid': 'rep14a',
21 'position_in_ref': '1..403',
22 'positions_in_contig': 'NA..NA',
23 'template_length': 402}}}},
24 'run_info': {'date': '10.02.2026', 'time': '15:20:44'},
5 'user_input': {'file_format': 'fastq', 25 'user_input': {'file_format': 'fastq',
6 'filename(s)': ['/tmp/tmpj3aqa6lu/files/3/2/3/dataset_32342c91-595d-40c3-b39a-60aa67724edc.dat'], 26 'filename(s)': ['/tmp/tmp1yi7ks0w/files/0/e/3/dataset_0e36e86f-0bbd-4a32-940e-8e30997c8d02.dat'],
7 'method': 'kma'}}} 27 'method': 'kma'}}}