Mercurial > repos > iuc > package_reprof_1_0_1

annotate tool_dependencies.xml @ 3:a010d7eddc71 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_reprof_1_0_1 commit 77faf71a148b51691a76b3dfe222c1109891b6c4
author iuc
date Wed, 02 Dec 2015 16:56:10 -0500
parents c98805a46c88
children ed6b6b8299bb
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c391423260a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_reprof_1_0_1 commit cc30e84dcc309a93f49f75250aa3344f926cee5e-dirty
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="perl" version="5.18.1">
c391423260a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_reprof_1_0_1 commit cc30e84dcc309a93f49f75250aa3344f926cee5e-dirty
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4 <repository changeset_revision="2590d4683481" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
c391423260a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_reprof_1_0_1 commit cc30e84dcc309a93f49f75250aa3344f926cee5e-dirty
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5 </package>
c391423260a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_reprof_1_0_1 commit cc30e84dcc309a93f49f75250aa3344f926cee5e-dirty
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6 <package name="fann" version="2.2.0">
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7 <repository changeset_revision="0f570ce183a8" name="package_fann_2_2_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="perl_ai_fann" version="0.10">
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10 <repository changeset_revision="2e39b7570b10" name="package_perl_ai_fann_0_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="reprof" version="1.0.1">
c391423260a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_reprof_1_0_1 commit cc30e84dcc309a93f49f75250aa3344f926cee5e-dirty
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13 <install version="1.0">
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14 <actions>
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15 <action sha256sum="e77d41b4c19efe050d71e2ae95c1752da6cf083ac3a649cb4e8bbfdefe23264d" type="download_by_url">
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16 https://depot.galaxyproject.org/software/reprof/reprof_1.0.1_src_all.zip
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17 </action>
c391423260a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_reprof_1_0_1 commit cc30e84dcc309a93f49f75250aa3344f926cee5e-dirty
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19 <action type="setup_perl_environment">
c391423260a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_reprof_1_0_1 commit cc30e84dcc309a93f49f75250aa3344f926cee5e-dirty
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20 <repository changeset_revision="2590d4683481" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
c391423260a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_reprof_1_0_1 commit cc30e84dcc309a93f49f75250aa3344f926cee5e-dirty
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21 <package name="perl" version="5.18.1" />
c391423260a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_reprof_1_0_1 commit cc30e84dcc309a93f49f75250aa3344f926cee5e-dirty
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22 </repository>
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23 <repository changeset_revision="2e39b7570b10" name="package_perl_ai_fann_0_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
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24 <package name="perl_ai_fann" version="0.10" />
c391423260a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_reprof_1_0_1 commit cc30e84dcc309a93f49f75250aa3344f926cee5e-dirty
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25 </repository>
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26 </action>
c391423260a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_reprof_1_0_1 commit cc30e84dcc309a93f49f75250aa3344f926cee5e-dirty
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28 <action type="set_environment_for_install">
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29 <repository changeset_revision="0f570ce183a8" name="package_fann_2_2_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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30 <package name="fann" version="2.2.0" />
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31 </repository>
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32 </action>
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33
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34 <action type="shell_command">
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35 autoreconf -vif &amp;&amp;
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36 ./configure &amp;&amp;
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37 cd lib/RG &amp;&amp;
c391423260a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_reprof_1_0_1 commit cc30e84dcc309a93f49f75250aa3344f926cee5e-dirty
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38 make Reprof.pm &amp;&amp;
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39 cd ../../ &amp;&amp;
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40 ./configure --prefix=$INSTALL_DIR
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41 make &amp;&amp;
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42 make install &amp;&amp;
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43 ./Build
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44 </action>
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45 <action type="set_environment">
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46 <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5</environment_variable>
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47 <environment_variable action="set_to" name="REPROF_MODEL_DIR">$INSTALL_DIR/share/reprof</environment_variable>
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48 </action>
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49 </actions>
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50 </install>
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51 <readme>
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52 Fast Artificial Neural Network (FANN) Library is a free open source neural
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53 network library, which implements multilayer artificial neural networks in C
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54 with support for both fully connected and sparsely connected networks.
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55
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56
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57 FANN requires gcc
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58 </readme>
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59 </package>
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60 </tool_dependency>