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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_reprof_1_0_1 commit d8243c24f3551919bb6812fdb538f780d113fb81-dirty
author iuc
date Tue, 08 Dec 2015 14:58:14 -0500
parents 4d2109f9f1d1
children
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<?xml version="1.0"?>
<tool_dependency>
    <package name="perl" version="5.18.1">
        <repository changeset_revision="2590d4683481" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="fann" version="2.2.0">
        <repository changeset_revision="7e98d93137ed" name="package_fann_2_2_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="perl_ai_fann" version="0.10">
        <repository changeset_revision="a4f2c18b07c1" name="package_perl_ai_fann_0_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="reprof" version="1.0.1">
        <install version="1.0">
            <actions>
                <action sha256sum="e77d41b4c19efe050d71e2ae95c1752da6cf083ac3a649cb4e8bbfdefe23264d" type="download_by_url">
                    https://depot.galaxyproject.org/software/reprof/reprof_1.0.1_src_all.zip
                </action>

                <action type="setup_perl_environment">
                    <repository changeset_revision="2590d4683481" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="perl" version="5.18.1" />
                    </repository>
                    <repository changeset_revision="7e98d93137ed" name="package_fann_2_2_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="fann" version="2.2.0" />
                    </repository>
                    <repository changeset_revision="a4f2c18b07c1" name="package_perl_ai_fann_0_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="package_perl_ai_fann" version="0.10" />
                    </repository>
                </action>

                <action type="shell_command">
                    autoreconf -vif &amp;&amp;
                    ./configure &amp;&amp;
                    cd lib/RG &amp;&amp;
                    make Reprof.pm &amp;&amp;
                    cd ../../ &amp;&amp;
                    ./configure --prefix=$INSTALL_DIR
                    make &amp;&amp;
                    make install &amp;&amp;
                    ./Build
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5</environment_variable>
                    <environment_variable action="set_to" name="REPROF_MODEL_DIR">$INSTALL_DIR/share/reprof</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
Fast Artificial Neural Network (FANN) Library is a free open source neural
network library, which implements multilayer artificial neural networks in C
with support for both fully connected and sparsely connected networks.


FANN requires gcc
        </readme>
    </package>
</tool_dependency>